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Abi7300 fluorescence quantitative pcr instrument

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI7300 is a fluorescence quantitative PCR instrument manufactured by Thermo Fisher Scientific. The core function of the ABI7300 is to perform real-time polymerase chain reaction (PCR) analysis by detecting and quantifying fluorescent signals during the amplification process.

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5 protocols using abi7300 fluorescence quantitative pcr instrument

1

Liver RNA Extraction and qPCR Analysis

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Trizol Reagent (Vazyme, NanJing, China) was used to extract total RNA from liver tissue, which was then treated by deoxyribonuclease I to remove the contaminant DNA. RNA was quantified based on the absorption of light by a Nanodrop ND-2000c spectrophotometer (Thermo Scientific, Camden, UK) at 260 nm (A260) and 280 nm. From each sample, 1 μg of RNA was used to synthesize cDNA in a 20 μL reaction mixture using the Primer-ScriptTM reagent kit (TaKaRa, Dalian, China) according to the manufacturers’ instructions. The real-time quantitative polymerase chain reaction was carried out by using the SYBR Premix Ex Taq II kit (TaKaRa) in an ABI 7300 fluorescence quantitative PCR instrument (Applied Biosystems, Foster City, CA, USA). The 20 μL reaction system included 10 μL of SYBR Premix Ex Taq buffer, 0.4 μL each of forward and reverse primers and dye, 2 μL of cDNA template, and 6.8 μL of distilled water. The real-time PCR cycling conditions were as follows: 95 °C for 30 s, 40 cycles of 95 °C for 5 s, and 60 °C for 30 s. The relative mRNA expression was determined using β-actin as an internal reference gene. The significance and correlation of quantitative results were analyzed by using 2‒ΔΔct as per Livak and Schmittgen [19 (link)]. Primer sequences are shown in Table 2.
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2

Culturing Thyroid Cells for Research

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Human normal thyroid cell line Nthy-ori3-1 (derived from human thyroid follicular epithelial normal cells) and human thyroid cancer cell lines (BC-PAP, K1, and TPC-1) were purchased from Chinese Academy of Sciences, Shanghai Institute of Biochemistry and Cell Biology (Shanghai, China). Cells were cultured in Roswell Park Memorial Institute (RPMI, Keygen, Nanjing, China) 1640 complete medium supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin and 100 μg/mL streptomycin in an incubator at 37°C with 5% CO2 and saturated humidity. The CO2 cell incubator purchased from Forma Scientific UK. ABI7300 fluorescence quantitative PCR instrument was purchased from Applied Biosystems Inc.
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3

Cell Line Cultivation and Characterization

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Human breast cancer cell lines (MCF7, Hs-578T, ZR-75-30, HCC1973) and human normal breast cell MCF-10A were purchased from the Chinese Academy of Sciences, Shanghai Institute of Biochemistry and Cell Biology (Shanghai, China). All cells were maintained in DMEM (Invitrogen, USA) supplemented with 10% fetal bovine serum (FBS, Hyclone, USA) and grown in humidified 37°C incubators supplied with 5% of CO2. The CO2 cell incubator purchased from Forma Scientific UK and FACS Calibri flow cytometer purchased from BD biosciences (USA). ABI7300 fluorescence quantitative PCR instrument was purchased from Applied Biosystems Inc.
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4

Thyroid Cell Culture and Analysis

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Human normal thyroid cell line Nthy-ori3-1 (derived from human thyroid follicular epithelial normal cells) and human thyroid cancer cell lines (BCPAP, BHP5-16, TPC-1 and CGTH-W3) were purchased from Chinese Academy of Science (Shanghai, China). Cells were cultured in Roswell Park Memorial Institute (RPMI, KeyGEN, Nanjing, China) 1640 complete medium supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin and 100 μg/ml streptomycin in an incubator at 37°C with 5% CO2 and saturated humidity. The CO2 cell incubator purchased from Forma Scientific U.K. and FACS Calibri flow cytometer purchased from BD Biosciences (U.S.A.). ABI7300 fluorescence quantitative PCR instrument was purchased from Applied Biosystems Inc.
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5

Quantifying Gene Abundance via Fluorescent qPCR

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Fluorescent qPCR was performed using the same primers as the high-throughput sequencing detailed above. A reaction mix of 20 μL consisted of 10 μL 2X ChamQ SYBR Color qPCR Master Mix, 0.8 μL each of upstream and downstream primer (5 μmol L−1), 2 μL template, 0.4 μL 50X ROX Reference Dye 1, and 6 μL ddH2O. The amplification program was 95 °C pre-denaturation for 3 min; 95 °C denaturation for 5 s, 58 °C annealing for 30 s, and 72 °C extension for 1 min (Hassan et al., 2021 (link)). An ABI7300 fluorescence quantitative PCR instrument (Applied Biosystems, Waltham, MA, USA) was used for amplification and measurement. Three replicates were used for each sample the final gene abundance was calculated based on the soil dry weight.
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