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Facscalibur platform

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The BD FACSCalibur platform is a flow cytometry system designed for multicolor analysis and sorting of cells. It utilizes a solid-state laser and a photomultiplier tube detector to capture and analyze data from individual cells. The system is capable of analyzing multiple parameters simultaneously, including cell size, granularity, and the expression of specific cell surface markers.

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89 protocols using facscalibur platform

1

Cell Cycle Analysis by Flow Cytometry

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Cells cultured in 6-well plates were harvested, washed once in PBS and fixed in 70 % ethanol for 48 h at 4 °C. The nuclei were stained with 50 μg/ml propidium iodide (PI) in 1 % Triton-X100/PBS containing 100 μg/ml DNase-free RNase, and the DNA content was analyzed using flow cytometry with the FACSCalibur platform (Becton Dickinson, San Jose, USA). The proportion of cells in each phase of the cell cycle was determined using the ModFit LT program (Verity Software House, USA).
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2

Flow Cytometric Analysis of Stem Cell Markers

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For flow cytometric analysis, the cells were harvested and dissociated into single cells with 0.25% trypsin and then washed in PBS plus 0.5% BSA twice. After washing, the cells were stained with antibodies to CXCR4 (FAB170P; R&D system), c-Kit (FAB332A; R&D system) and DAZL (ab34139; abcam) for 40 min at 4°C. After washing by PBS twice, the cell pellet was re-suspended in 300 μl PBS for the final flow cytometric analysis of CXCR4 and c-Kit. Besides, the second antibody (ZF-0511, 1:400, Alexa Fluor 488-conjugated goat anti-rabbit IgG, ZSGB-BIO) was added into DAZL treatment for 40 min at 4°C. After that, the cells were washed twice with PBS and re-suspended in 300 μl of PBS for the final flow cytometric analysis. As a control for the analysis, the undifferentiated cells in a separate tube were treated with a mouse IgG1 APC-conjugated antibody (IC002A; R&D system) and a mouse IgG1 isotype control-PE (IC002P; R&D system) for c-Kit and CXCR4, respectively. For DAZL, the undifferentiated cells were only strained with the second antibody. Finally, cells analysis was performed on the Becton-Dickinson FACS Calibur platform.
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3

Protein Expression and Localization Analysis

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Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and western blotting were used to analyze the expression of the target protein, and western blotting was developed using the gp85-specific mouse monoclonal antibody JE9 as the primary antibody. Horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (Sigma, 1:5,000) was used as the secondary antibody.
For flow cytometry, L. plantarum cells were cultured in MRS broth overnight at 37°C. The cell pellets were sequentially incubated with gp85-specific mouse monoclonal antibody (1:800) and fluorescein isothiocyanate (FITC)-conjugated anti-mouse IgG secondary antibodies (1:5,000; Sigma). Finally, 3 × 104 cells were analyzed with a FACS Calibur platform (Becton Dickinson, Oxnard, CA, USA) equipped with CellQuest software.
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4

Quantifying T Cell Infiltration in Spinal Cord Injury

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To assess T cell entry into the spinal cord after CCI, flow cytometry was used to measure CD3-positivity levels in mononuclear cells extracted from the dorsal horn, as CD3 is a well-known T cell marker (34 (link)). On day 3 of CCI, after an overdose intraperitoneal injection of urethane (2 g/kg), the rats' lumbar spinal cord segments were harvested. The dorsal horn tissues ipsilateral to the site of CCI or sham surgery were isolated, placed in 0.01-M PBS, and homogenized into single-cell suspensions with a cell strainer. Homogenates were washed with 0.01-M PBS, suspended in a 30%/70% discontinuous-gradient Percoll solution (Sigma-Aldrich), and centrifuged at 390 × g for 30 min.
Mononuclear cells were collected, washed with 0.01-M PBS, and resuspended in a fluorescence-activated cell sorting buffer solution for 30 min at 4°C. The cells were labeled with fluorescein isothiocyanate–conjugated mouse anti-CD3 antibodies (1:100 dilution; eBioscience, San Diego, CA, USA) for 20 min at room temperature, and ≥10,000-cell samples were analyzed with the FACSCalibur platform running with CellQuest software (Becton Dickinson; Franklin Lakes, NJ, USA) to determine the percentage of mononuclear cells that were CD3-positive.
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5

Apoptosis Determination in Cell Culture

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Cells (5 × 105) were seeded into 6-well plates containing complete 1640 culture solution, without FCS, for 48 h. Apoptosis rate was determined using an apoptosis detection kit (Annexin V PE/7-AAD, BD Biosciences, Franklin Lakes, NJ, United States), and analyzed by flow cytometry on a FACSCalibur platform (Becton Dickinson, San Jose, CA, Unied States).
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6

Nuclei Extraction and FACS Analysis

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Approximately 1 × 108 cells were harvested from the HL5 culture, washed in phosphate-buffered saline (PBS) and pelleted by centrifugation. Their nuclei were prepared using a nuclei extraction kit NE-PER (Pierce), resuspended in 2 mL PBS containing 1 mM EDTA, 200 μg/mL RNase A, and 50 μg/mL propidium iodide, and then analyzed on a FACS Calibur platform (Becton Dickinson) using an excitation wavelength of 488 nm. To ensure single-nucleus measurement, the gate was set using the FLS-A and FL2-W parameters of the doublet discrimination module.
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7

Phenotyping of Primary hDPSCs

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The phenotype of primary hDPSCs (n = 4) at passage 3 (P3) was characterized using flow cytometry. Briefly, 2 × 105 cells for each marker were resuspended in 50 µL of the PBS buffer and incubated with selected human-specific monoclonal antibodies, directly labeled with PE: CD73 (clone AD2), CD90 (clone 5E10), CD105 (clone 266), CD45 (clone HI30), CD31 (clone WM59), CD54 (ICAM-1) (clone HA58), CD106 (VCAM-1) (clone 51-10C9), HLA ABC (clone G46-2.6), HLA DR (clone G46-6) (all from BD Pharmingen, San Jose, CA, USA), CD44 (IgG2a, clone 156-3C11), (Thermo Fisher Scientific, Rockford, MI, USA) and Stro-1 (clone STRO-1) (Invitrogen, Thermo Fisher Scientific, Rockford, MI, USA). All samples were incubated for 30 min in the dark at 4 °C. Mouse isotype-matched IgG1 and IgG2 were applied as negative controls (BD Pharmingen, San Jose, CA, USA). The cells were analyzed using flow cytometry with a FACS Calibur platform (Becton Dickinson, San Jose, CA, USA). The expression levels of the selected antigens were evaluated using the CellQuest software (Becton Dickinson, San Jose, CA, USA).
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8

Chondrocyte Apoptosis Assay by Flow Cytometry

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Apoptosis was assessed by Annexin V-fluorescein isothiocyanate/propidium iodide (annexin V-FITC/PI) binding kit (Becton–Dickinson) using flow cytometry. To this aim, the cells were seeded at 4 × 104 cells/cm2 in 6-well plates and incubated for 24 h at 37 °C in a humidified atmosphere of 5% CO2. The cells, were then maintained in standard conditions (medium supplemented with 10% FBS) for 24 h, after which the cells were exposed to 1% LD with or without 10% PRP for 30 min (Fig. 1). After the treatments, the mediums were collected and the cells were detached with 0.05% of DPBS/EDTA. The chondrocytes were washed twice with DPBS without Ca2+ and Mg2+. Procedures for labelling of of Annexin V-FITC/PI were carried out according to the manufacturers’ instructions. Flow cytometry data acquisition was performed on a FACSCalibur platform (Becton–Dickinson) equipped with 488 and 633 nm lasers and running CellQuest Software (Becton–Dickinson).

Cell viability. The effects of LD alone or with 10% PRP on cell viability were assayed in chondrocytes maintained for 24 h in medium (starved-cells), in medium containing 10% FBS (FBS-cell) or 10% PRP (PRP-cells). Date are expressed as mean ± SD. The experiments were repeated thrice, in triplicates. *P < 0.005 vs cell untreated of each experimental group (PBS)

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9

Characterization of CXCR4, Apoptosis, and ROS

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CD34+ stem cells were incubated for 30 minutes with allophycocyanin‐conjugated monoclonal antihuman CXCR4 antibody (BD Biosciences, San Jose, CA), Annexin V (BD Biosciences), and a CellROX green fluorescent assay kit (Life Technologies Italia, Monza, italy) for detection of the CXCR4 receptor, early apoptosis, and reactive oxygen species (ROS), respectively. The Becton‐Dickinson FACS Calibur platform (Becton‐Dickinson, Franklin Lakes, NJ) was used to analyze samples by use of appropriate physical gating. At least 104 events in the indicated gates were acquired.
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10

Apoptosis Quantification via Flow Cytometry

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The cells (5 × 105) were seeded into 6-well plates containing complete RPMI 1640 culture medium without fetal bovine serum for 48 h. The rate of apoptosis was then detected with an apoptosis detection kit (Annexin V PE/7-AAD BD Biosciences, Franklin Lakes, NJ, USA) by flow cytometry analysis using a FACSCalibur platform (Becton Dickinson, San Jose, CA, USA).
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