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13 protocols using ab28340

1

Antibody Panel for Cell Characterization

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The following primary antibodies were used: mouse monoclonal anti-CD26 (mAb M-A261, Invitrogen) and rabbit polyclonal (pAb) anti-CD26 antibody (Abcam, Ab28340). Other antibodies used in the present study were rabbit pAb anti-apolipoprotein-E (ApoE; Abcam, Ab85311), anti-CD3 (PA5-32318) Thermo Fisher Scientific, anti-cluster of differentiation 42b (CD42b; Abcam, Ab104704), anti-rabbit polyclonal glycophorin (Abcam, 196568), anti-divalent metal protein 1 (DMT1; Abcam, Ab123085), anti-ferroportin (FPN; Abcam Ab85370), anti-GFAP (Abcam Ab48050), anti-CD68 (Sigma–Aldrich, AMAB98073), and anti-CD11b (Thermo Fisher, mAbM1/70). The following secondary antibodies were used: biotinylated goat anti-rabbit-Ig and biotinylated horse anti-mouse (both from Vector Laboratories, 1:250 for IHC); Alexa Fluor 568-labelled donkey anti-mouse-Ig, Alexa Fluor 488-labelled donkey anti-rabbit-Ig, and Alexa Fluor 568-labelled donkey anti-goat-Ig (all from Invitrogen, 1:1000 for immunofluoresence).
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2

Protein Quantification and Western Blot

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Total protein content in tissues or cells was extracted using a radio-immunoprecipitation assay (RIPA) lysate containing phenylmethylsulfonyl fluoride (PMSF). The procedures for Western blot were performed as previously described (22 (link)), with the following primary antibodies purchased from Abcam Inc. (Cambridge, UK): anti-DPP4 (ab28340, dilution ratio of 1:1,000), anti-Ki67 (ab16667, dilution ratio of 1:1,000), anti-VEGF-A (ab46154, dilution ratio of 1:1,000), anti-GAPDH (ab9485, dilution ratio of 1:2,500), and horseradish peroxidase-conjugated anti-rabbit IgG (ab97051, dilution ratio of 1:2,000, Abcam Inc.). Results were visualized with enhanced chemiluminescence detection reagents. The protein content was represented by the ratio of gray value between the targets and internal reference (GAPDH).
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3

Protein Extraction and Western Blot Analysis

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Liver tissue (100 to 500 mg) was homogenized and used for protein extraction. The protein extracts from the cultured cells were also used for the assays that are described below. The protein sample concentrations were determined using a Bradford kit (Beyotime Co., Jiangsu, China). The same amount of protein samples were separated in sodium dodecyl sulfate-polyacrylamide gels and transferred onto polyvinyl difluoride (PVDF) membranes. The membranes were blocked with 5% bovine serum albumin (BSA) and incubated with anti-PKCε (1:1000) or anti-IRS-1 tyr (1:1000), anti-DPP4 (1:1000, ab28340, Abcam, Cambridge, UK), or anti-HSP90 (1:2000, AH732, Beyotime Co.) antibodies. After incubation with the corresponding secondary antibodies, the membranes were detected using an electrochemiluminescence (ECL) kit (Beyotime Co.). The corresponding bands were quantified using grayscale analyses, and the relative expression was calculated by normalizing to β-tubulin (1:2000, AF5012, Beyotime Co.).
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4

Multimarker Immunohistochemistry of Pancreatic Islets

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Pancreases or isolated islets from Wistar rats, GK rats and human subjects were fixed in 4% formalin, paraffin embedded and cut into 5‐μm sections. For immunofluorescence, sections were dewaxed and rehydrated as described above. All samples were subjected to antigen retrieval by heating in 0.01 M sodium citrate solution before immunolabelling. Sections were incubated overnight using antibodies targeting PYY (ab22663), insulin (in house), glucagon (G‐2654, Sigma, Gillingham, UK), somatostatin (sc‐25262, Santa Cruz, Insight Biotechnologies, Wembley, UK), PP (ab77192), NPY1R (ab91262, Abcam, Cambridge, UK), NPY2R (ab31894, Abcam), NPY4R (HPA027863, Sigma), NPY5R (ab32886, Abcam) or DPP‐IV (ab28340, Abcam). The tyramide amplification system was used as a secondary antibody system to improve visualization of PYY in human samples, all NPYR proteins and DPP‐IV (ThermoFisher, Loughborough, UK). All other proteins were visualized using fluorescently‐ and HRP‐labelled secondary antibodies for immunolocalization as follows; anti‐rabbit 488 (A11034, Life Technologies, Loughborough, UK), anti‐mouse TRITC (F5262, Sigma), anti‐guinea pig 648 (ab150187, Abcam), anti‐rabbit HRP (P0448, Dako, Cheadle, UK). Images were visualized using a BioRad (Radiance 2100) confocal microscope.
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5

DPP4 Expression in N2a Cells

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Mouse neuroblastoma N2a cells (ATCC, CCL131) were grown in DMEM FCS (10%)-penicillin/streptomycin medium. Cells were plated in 6-well plates at a density of 100,000 cells/well. Five days after infection, cells were fixed for 20 min with paraformaldehyde (4%), washed three times with PBS, permeabilized for 5 min with Triton X-100 (0.1%), and blocked for 1 h with BSA (5%)/Tween (0.05%). The primary antibody against DPP4 (dilution of 1/500, Abcam ab28340) was added overnight, and then, cells were rinsed three times with PBS and incubated for 1 h with the secondary anti-goat antibody (Interchim, dilution of 1/500 + DAPI (1/20,000)). Cells were then rinsed again with PBS 1× and fixed with the VectaMount medium (Vector Laboratories) before Cytation imaging analysis with the Biotek Cytation 5 microscope, which automatically acquired six pictures per well with the same acquisition parameters (×20 magnification, numeric aperture 0.45, brightfield, at following excitation and emission wavelengths, respectively: DAPI (377; 447); GFP (469; 525); Texas Red (586; 647)). We used ImageJ software to quantify the fluorescence intensity Texas Red in GFP-positive cells.
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6

Protein Expression and Immunoblotting Protocol

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Tissues and myoblasts were lysed on ice in RIPA buffer (1 × phosphate-buffered saline, 1% NP40, 0.1% SDS, 5 mM ethylenediaminetetraacetic acid, 0.5% sodium deoxycholate and 1 mM sodium orthovanadate) treated with protease inhibitor (Complete ethylenediaminetetraacetic acid-free; Roche). Equal amounts of lysis supernatant were fractionated by 8–10% SDS–polyacrylamide gel electrophoresis for immunoblot analysis. Separated proteins were then transferred to a polyvinylidene difluoride membrane (Immobile P; Millipore), which was then exposed to 5% dried skim milk in a solution containing 50 mM Tris–HCl (pH 7.5), 150 mM NaCl, and 0.1% Tween 20 (TBST). Membranes were incubated with primary antibodies overnight at 4 °C and then with corresponding secondary antibody conjugated to horseradish peroxidase for 1 h at room temperature. Primary antibodies were listed as follows: DPP-4 (1:2000; ab28340, Abcam), Ras (1:5000; ab52939, Abcam), p-ERK1/2 (1:5000; ab201015, Abcam), p-mTOR (1:1000; #5536, Cell signaling technology), p-AKT (1:2000, #4060, Cell signaling technology) and GAPDH (1:2000; #5174, Cell signaling technology). The signals were detected by enhanced chemiluminescence.
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7

Western Blot Analysis of Protein Expression

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Western blot analysis was performed following the previously described protocol.[66] Antibodies used in this study include anti‐human DPP4 antibody (1:1000, Abcam, ab28340), anti‐human PU.1 antibody (1:1000, Abcam, ab88028), anti‐phospho‐(Ser/Thr) Phe antibody (1:1000, Cell Signaling Technology, 9631S), and anti‐actin (1:1000, Cell Signaling Technology, 4970). Full scans of western blots are included in Figures S9,S10, Supporting Information.
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8

Protein Extraction and Western Blot Analysis

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Samples were homogenized in lysis buffer (pH 7.4) containing a protease inhibitor cocktail (HY-K0010, MedChenExpress), phosphatase inhibitor cocktail III (HY-K0023, MedChenExpress), 50 mM Tris, 150 mM NaCl, 5 mM ethylenediaminetetraacetic acid (EDTA), and 0.5% NP-40 (Sigma-Aldrich). The protein concentration was determined using a BCA Protein Assay kit (Tiangen Biotech). Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was performed, and the samples were blotted onto a polyvinylidene fluoride (PVDF) membrane. Antibodies against DPP4 (ab28340, Abcam), F4/80 (28463-1-AP, Proteintech), CD206 (18704-1-AP, Proteintech), p44/42 MAPK (Erk1/2) (137F5) rabbit mAb (4695, Cell Signaling Technology), Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (9101, Cell Signaling Technology), signal transducer and activator of transcription 6 (STAT6) (ab32520, Abcam), and Phospho-STAT6 (phospho Y641) (ab263947, Abcam) were used at a dilution of 1:2000. Secondary antibody binding and detection were performed according to standard protocols using an enhanced chemiluminescence (ECL) detection reagent (Bio-Rad).
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9

Western Blot Analysis of Cell Proteins

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Total proteins of cells were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. After being blocked with 5% non-fat dry milk in PBS, the membrane was incubated with antibodies to FAPα (1:1,000, AF3715; R&D Systems, Inc., Minneapolis, MN, USA), dipeptidyl peptidase 4 (DPP4; 1:1,000, ab28340; Abcam, Cambridge, MA, USA) or matrix metalloproteinase (MMP)2 (1:1,000, ab86607; Abcam) at 4°C overnight. After being washed several times, the polyvinylidene difluoride membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibody at room temperature for 2 hours. The bands were then detected by Pierce ECL Plus Western Blotting Substrate (Thermo Fisher Scientific) according to the manufacturer’s protocols. β-Tubulin protein levels were also determined by using the specific antibody (1:3,000, ab126165; Abcam) as a loading control.
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10

Quantitative Protein Analysis in EC Cells

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Total protein was extracted from EC cells using buffer containing Halt Protease Inhibitor Cocktail (#87786, #78429, and #78438; Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane, which was blocked with 5% non-fat milk and incubated overnight at 4°C with antibodies against DPPIV (1:400, ab28340), HIF-1α (1:500, ab463), VEGFA (1:400, ab51745) (Abcam) or β-tubulin (1:1000, #2128; Cell Signaling Technology, Danvers, MA, USA). Membranes were then incubated with a peroxidase-conjugated secondary antibody for 2 h at room temperature. Immunoreactivity was visualized by enhanced chemiluminescence using an Alpha Innotech Imaging System (Protein Simple, Santa Clara, CA, USA). Protein band intensity was normalized to the level of β-tubulin. Each experiment was repeated at least three times.
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