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2 protocols using 6 chloropurine 2 deoxyriboside

1

Enzymatic DNA Modifications Analysis

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Acetaldehyde and [ethyl-D5]EtNH3Cl were purchased from Millipore Sigma (St. Louis, MO, USA). In addition, 6-Chloropurine-2′-deoxyriboside was obtained from Carbosynth (Compton, UK). Water (LC-MS grade), methanol (MeOH, LC-MS grade), acetonitrile (ACN, LC-MS grade), 2-propanol (IPA, LC-MS grade), and formic acid (FA, 98% v/v) were purchased from Fisher Scientific (Hanover Park, IL, USA). Distilled water was purified by a Milli-Q system (Milford, MA, USA). Deoxyribonuclease I recombinant expressed by Pichia pastoris (R-DNase, 10,000 U/mg, phosphodiesterase-1 extracted from Crotalus adamanteus (PDE-1, 0.4 U/mg, recombinant alkaline phosphatase expressed by Pichia pastoris (R-ALP, 7000 U/mg, calf thymus DNA (CT-DNA, 5 mg), NaBH3CN, Acetaldehyde, Tris base, double-filtration membrane Amicon Ultra (30 kDa cutoff, 0.5 mL), and single-filtration membrane Microcone (10 kDa cutoff, 0.5 mL) were purchased from Millipore Sigma (St. Louis, MO, USA). Silanized vials (0.3 mL, 1.2 mL, 4 mL, 20 mL) were purchased from ChromTech (Apple Valley, MN, USA). Cell lysis solution, protein precipitation solution, RNase A, and proteinase K were obtained from Qiagen (Hilden, Germany).
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2

Synthesis and Characterization of Tobacco Metabolites

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NNK and NNKOAc were purchased from Toronto Research Chemicals. (S)-NNAL, (R)-NNAL, N6-PHB-dAdo, 2-(3-pyridyl)-1,3-dithiane, tert-butyl 3-(2-(3-pyridyl)-1,3-dithianyl)-1-propylcarbamate, and [pyridine-D4]tert-butyl 3-(2-(3-pyridyl)-1,3-dithianyl)-1-propylcarbamate were synthesized as previously described.15 (link),33 (link),34 (link) [15N5]2′-deoxyadenosine (>99% 15N5 incorporation) was obtained from Cambridge Isotope Laboratories (Tewksbury, MA). 6-Chloropurine-2′-deoxyriboside was obtained from Carbosynth (Compton, United Kingdom). Reagents for DNA isolation were purchased from Qiagen (Hilden, Germany). Calf thymus DNA, phosphodiesterase II, and micrococcal nuclease were obtained from Worthington Biochemical Co. (Lakewood, NJ). Alkaline phosphatase was procured from Roche Diagnostics GmbH (Mannheim, Germany). Porcine liver esterase and all other chemicals and solvents were obtained from either Sigma Aldrich (Milwaukee, WI) or Thermo Scientific (Waltham, MA) in reagent grade or higher and used without further purification.
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