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3 protocols using cleaved capase 9

1

Triptolide-Induced Apoptosis Pathway

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Triptolide (>99% pure) was purchased from Calbiochem, dissolved in DMSO, aliquoted, and stored at −20°C. The Caspase-8 inhibitor Z-IETD-FMK (cat #550380), caspase-9 inhibitor Z-LEHD-FMK (cat #550381) and negative control caspase inhibitors Z-FA-FMK (cat #550411) were purchased from BD Pharmingen. The Cathepsin B inhibitor CA-074me (620106) was purchased from Peptide Institute, INC. Primary antibodies used for western blots were as follows: Caspase-8, Cleaved-caspase-3, Cleaved-capase-9, PARP, Bcl-2, Bid, JNK, phosphorylated-JNK, DR5, cleaved Caspase-3 (Cell Signaling); BAX (N-20) (Santa Cruz) and c-FLIP (ENZO life science). Primary antibodies against DR4 and DR5 for flow cytometry were purchased from eBioscience.
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2

Apoptosis and Autophagy Analysis

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Halofuginonehy drobromide, 5-fluorouracil, Earle's Balanced Salt Solution (EBSS), chloroquine (CQ), propidium iodide (PI) and Pierce (R) BCA Protein Assay Kit were obtained from Sigma-Aldrich (Munich, Germany). Artemisinin and In situ BrdU-red DNA fragmentation (TUNEL) assay kit were purchased from Abcam (Cambridge, UK). Antibodies against cleaved capase-8, cleaved capase-9, cleaved caspase-3, cleaved PARP, SQSTM1/p62, LC3-II and β-Actin were purchased form Cell Signaling Technology (Danvers, MA, USA). HRP-goat anti-rabbit secondary antibody was purchased from Invitrogen (Carlsbad, CA, USA). Goat antimouse IgG-HRP secondary antibody and caspase-3 inhibitor (z-DEVD-fmk) were purchased from San Cruz Biotechnology (Santa Cruz, CA, USA). Caspase-8 inhibitor (z-IETD-fmk) and caspase-9 inhibitor (z-LEHD-fmk) were purchased from R&D Systems (Wiesbaden-Nordenstedt, Germany). FITC Annexin V Apoptosis Detection Kit I was obtained from BD Bioscience (San Jose, CA, USA).
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3

Molecular Mechanisms of Apoptosis Regulation

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The Matrigel and Transwell chambers were obtained from BD Biosciences (San Jose, CA, USA) and Corning Costar (Acton, MA, USA), respectively. Antibodies against cleaved caspase-3, cleaved capase-9, PARP, Bax, Bcl-2, Bcl-xL, Fas, DR5, phospho-ERK1/2, ERK1/2, phospho-p38, p38, phospho-JNK, JNK, phospho-NF-κB, NF-κB, phospho-STAT3, STAT3, phospho-AKT, AKT, β-actin, rabbit IgG, and mouse IgG were purchased from Cell Signaling Technology (Danvers, MA, USA). The anti-MITF antibody was obtained from Abcam (Cambridge, MA, USA).
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