Stopped-flow fluorescence traces were analyzed using a Pro-Data Viewer (Applied Photophysics Ltd). Assuming pseudo-first-order kinetics with [PA] at least 5-fold higher than that of NBD P9 PAI-1 or its complex with Nbs, a single exponential equation was fit to the stopped flow traces to calculate kobs. The quality of the fit was estimated by visual analysis of the plots of the residuals (deviation of the fitted function from the actual data). The values of kobs (n ≥ 3; standard error < 10%) were plotted against [PA]. Plots were fitted by hyperbolic or linear equation to calculate parameters (klim, Km, and klim/Km), using nonlinear least squares fitting with the Levenberg-Marquardt algorithm (SigmaPlot 12.0 for Windows; SPSS Inc). Correlation coefficients (r) calculated from curve fittings were used as a parameter of the goodness of fit; r2 of the fit was greater than 0.90 for all the kinetic data.
Sigmaplot 12.0 for windows
SigmaPlot 12.0 for Windows is a data analysis and graphing software. It provides tools for creating various types of plots and charts from data. The software is designed to work on the Windows operating system.
Lab products found in correlation
2 protocols using sigmaplot 12.0 for windows
Quantifying Small-Molecule Inhibition Kinetics
Behavioral and Neurochemical Analysis
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