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11 protocols using ab66047

1

Quantifying Preserved Serotonin Fibers

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Fluorescent staining of an anti-5-HT antibody (ab66047, Abcam, Cambridge, UK) was used to evaluate preserved 5-HT fibers in the spinal cord. The number of 5-HT-immunolabeled axons 3 mm caudal to the epicenter of the injury was quantified with ImageJ (Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, MD, USA) in a section perpendicular to the rostral–caudal axis of the spinal cord. The number of positive fibers was counted in three different high-magnification images from every fifth section. The number of positive fibers was calculated in a given area of 1 square millimeter during microscopic analysis. Preserved 5-HT fibers in the 5 animals in CL2020 and 7 animals in Control groups were compared using the Mann–Whitney U test.
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2

Quantification of Enteroendocrine Cell Innervation

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L-cells and EC cells were immunolabeled using antibodies against GLP-1 (1:200, SC-7782 Santa Cruz Biotechnology, Dallas, TX, USA) and 5-HT (1:400, ab66047 Abcam, Cambridge, UK), respectively. Neuronal innervation was assessed using pan-neuronal markers, protein gene product (PGP) 9.5 (1:800, 7863-0504 AbD Serotec), and the GLP-1 receptor (1:400, AGR-021 Alomone Labs). Staining for pERK (1:200, 4370 Cell Signalling, Danvers, MA, USA) and pCamKII (1:200, ab171095 Abcam) was performed following Ussing chamber experiments. Briefly, 10 μm sections were washed with blocking buffer. The primary antibody was applied (19 h, 4 °C), and tissues were washed with phosphate-buffered saline (PBS) and incubated (60 min, room temperature) with species-specific Alexa Fluor-conjugated secondary antibodies (1:200, Invitrogen, Carlsbad, CA, USA). A Leica DM4000 epifluorescence microscope was used to visualize immunoreactivity (IR) and images captured with a QImaging camera. Immunopositive cells for each group were manually counted in each section and averaged over five fields of view, as previously described [1 (link)]. Neuronal labeling was quantified using ImageJ software, where five fields of view (1.44 megapixel) were analyzed with ImageJ for the total number of immunoreactive pixels in the region of interest within the mucosal layer.
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3

Serotonin Immunohistochemistry in Frozen Tissue

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Frozen DRN tissue sections of 10 μm were mounted onto polyethylene naphthalate (PEN) slides and fixed in ice-cold 50% acetone/50% ethanol solution for 5 min on ice. Sections were washed in ice-cold phosphate-buffered saline (PBS), blocked in 1% hydrogen peroxide for 2 min, followed by three quick submersions in ice-cold PBS. Sections were then placed in a dilution of the primary antibody against serotonin (5-HT; Abcam, ab66047) in PBS for 10 min at room temperature. After the incubation, sections were washed three times in PBS and incubated with avidin-biotin complex in PBS for 10 min at room temperature. Next, sections were washed three times in 50 mM Tris buffer and immersed in 3.3′-diaminobenzidine (DAB) solution (9.3 mL 50 mM Tris; 200 μL DAB (5 mg/mL); 500 μL saturated nickel, and 4 μL of 1% hydrogen peroxidase) for 5 min, followed by two quick rinses in 50 mM Tris to stop the reaction. All sections were stored at −80 °C until further processing.
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4

Immunohistochemical Labeling of Catecholaminergic and Serotonergic Neurons

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Mice were transcardially perfused with 4% paraformaldehyde and then postfixed overnight. Coronal brain slices containing the LC or dorsal raphe were cut at a thickness of 50 μm, using a vibratome (Leica VT1000S). Free-floating slices were permeabilized with 0.5% Triton-X 100 and blocked with 1% fish gelatin in 0.1 M phosphate-buffered saline (pH 7.4). NE-positive neurons were immunostained by incubating overnight with rabbit anti-dopamine beta-hydroxylase (1:500, Abcam ab209487) and labeled with Alexa 546-conjugated donkey anti-rabbit secondary antibody (1:1000, Invitrogen). 5-HT neurons were immunostained by incubating with goat anti-5-HT antibody (1:500, Abcam ab66047) and similarly labeled with Alexa 647-conjugated donkey anti-goat secondary antibody (1:1000, Invitrogen).
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5

Immunohistological Analysis of Brain Sections

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For cryoprotection, brains were gradually immersed in 10, 20, and 30% sucrose in 24 h intervals and embedded in OCT compound (Leica Microsystems, Bensheim, Germany) with liquid nitrogen. The brains were cut into frozen coronal sections (30 μm) using a Leica CM3050 cryostat and then stored in a free-floating buffer. For immunohistological analysis, the sections were blocked in 5% normal chicken serum (containing 0.3% Triton X-100) for 1 h. After washing, the sections were incubated with primary antibodies against ionized calcium-binding adaptor molecule 1 (Iba-1, 1:200, 019-19741, Wako) or 5-hydroxytryptamine (5-HT, 1:200, ab66047, Abcam) overnight at 4°C. Subsequently, the sections were incubated with goat anti-rabbit IgG HRP (1:400, ab6722, Abcam) or Alexa Fluor® 488 donkey anti-goat IgG H&L (1:400, ab150129, Abcam) secondary antibodies for 2 h at RT. To analyze the Iba-1-positive cells, the sections were incubated with an avidin-biotin-peroxidase complex (VECTASTAIN ABC kit, Vector Laboratories) for 2 h. The peroxidase activity was visualized using a stable diaminobenzidine solution. To analyze the 5-HT-positive signal, the sections were exposed to DAPI (1:1,000, D9542, Sigma) to stain cell nuclei. Immunoreactivity was observed under an Axio-Phot microscope (Carl Zeiss, Germany). The intensity was quantified using ImageJ 1.46 software (NIH, Bethesda, MD, USA).
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6

Hippocampal Protein Expression Analysis

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The protein activities of tryptophan hydroxylase 2 (TPH2), 5-HT, BDNF, CREB, and p-CREB proteins in the hippocampus were evaluated by western blotting, as described by Grønli et al. (Grønli et al., 2006 (link)). The proteins from homogenates were separated by 10% polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking in 5% skim milk, the membranes were probed overnight at 4°C with primary antibodies: Rabbit anti-TPH2 monoclonal antibody (1:1,000, ab 111828, Abcam), Goat anti-5-HT monoclonal antibody (1:1,000, ab66047, Abcam), Rabbit anti-CREB monoclonal antibody (1:1,000, ab32515, Abcam), Rabbit anti-CREB (phospho S133) monoclonal antibody (1:1,000, ab32096, Abcam), Rabbit anti-BDNF monoclonal antibody (1:1,000, ab108319, Abcam), and Goat anti-beta actin polyclonal antibody (1:1,000, ab8229, Abcam). The membranes were washed and incubated for 2 h with HRP-conjugated anti-rabbit secondary antibodies. Western blots were visualized using an enhanced chemiluminescence (ECL) advanced kit. The protein expression was semi-quantified using ImageJ (NIH).
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7

Immunofluorescence analysis of 5-HT and GR

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Immunofluorescence analyses were performed using a modified method described by the previous studies (Zhang et al., 2016 (link); Zhao et al., 2017 (link)) to observe the 5-HT and GR relative intensity in dorsal raphe nuclei (DRN) and the hippocampal CA1 area, respectively. Brain tissues were cryoprotected in 30% sucrose, embedded in tissue-freezing medium with liquid nitrogen, and cut into frozen coronal sections (35 μm) using a Leica CM3050 cryostat. Sections were stored under anti-freeze buffer. Parallel free-floating sections were treated with blocking buffer (5% normal chicken serum in PBS and 0.3% Triton X-100 for 1 h at 4°C) and incubated with primary antibodies against 5-HT (1:400, ab66047, Abcam) or GR (1:200, sc-393232, Santa Cruz) overnight at 4°C. After washing with ice-cold PBS, sections were incubated with donkey anti-goat IgG H&L (1:400, Alexa Fluor® 488, ab150129, Abcam) or goat anti-mouse IgG H&L (1:400, Alexa Fluor® 594, ab150116, Abcam) secondary antibodies for 2 h at 4°C. The sections were subsequently exposed to DAPI (1:1,000, D9542, Sigma) to stain cell nuclei. All immunoreactions were observed under an Axiophot microscope (Carl Zeiss, Germany). Total signal intensity was quantified using the ImageJ 1.46 version (NIH, Bethesda, MD, USA) and compared relatively with the control group.
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8

Immunofluorescent Staining of Gut Hormones

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7 μm wax embedded sections were stained for PYY using primary polyclonal rabbit anti-PYY (1:1000, Abcam, ab22663), with secondary FITC-conjugated chicken anti-rabbit antibody (1:200, Abcam, ab6825). Staining for GLP-1 was carried out using primary polyclonal mouse anti-GLP-1 with secondary TRITC-conjugated goat anti-mouse (1:200, Abcam, ab5867). BrdU was stained for using primary monoclonal mouse anti-BrdU (1:100, Sigma, 13843420001) with secondary TRITC-conjugated polyclonal goat F(Ab) anti-mouse (1:200). 5HT was stained for using primary goat anti-5HT (1:500 Abcam, ab66047) with polyclonal donkey anti-goat (1:50, Abcam, ab6566). Nuclei were stained with DAPI (4′,6-diamidino-2-phenylindole) in Fluroshield (Abcam). Immunofluorescent images were acquired on a Carl Zeiss Axiovert 100S TV microscope. The operator performing the cell-counting was blinded to the groupings.
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9

Immunohistochemical Analysis of 5-HT and SP in Shrews

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Shrews (n = 5–6 shrews per group) were treated with either vehicle or yohimbine (1 mg/kg, i.p.) and rapidly anesthetized with isoflurane and subjected to perfusion at 15 min and 30 min post-treatment to examine 5-HT and SP immunoreactivity. The experimental procedure prior to staining was performed as described above for Section 4.4.1. c-fos Staining and Image Analysis. Coronal brainstem sections (20 μm) were blocked with 0.1 M PBS containing 10% donkey serum and 0.3% Triton X-100, then incubated overnight at 4 °C with a mix of goat anti-5-HT primary antibody (1:1000, ab66047, Abcam) and rat anti-SP primary antibody (1:400, MAB356, EMD Millipore, Burlington, VT, USA) in 0.1 M PBS containing 5% donkey serum and 0.3% Triton X-100. Sections were washed 3 times (10 min each) in PBS and incubated in a mix of Alexa Fluor 488 donkey anti-goat (1:500, ab150133, Abcam) and cy3-conjugated donkey anti-rat (1:500, AP189C, EMD Millipore) secondary antibody in 0.1 M PBS containing 0.3% Triton X-100 for 2 h at room temperature. After washing with PBS 3 times (10 min each), sections were mounted with anti-fade mounting medium containing DAPI (Vector Laboratories). Images for the DVC were acquired using a confocal microscope (Zeiss LMS 880) as described above. Fluorescence intensity (mean gray value) of 5-HT and SP values were acquired using ImageJ software, as described previously [45 (link)].
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10

Immunofluorescence Staining of GB1 and 5-HT

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The slices were fixed at room temperature for 30 min, washed six times 1x PBS for 5 min each, and then placed in 1% BSA blocking solution at room temperature for 60 min. The blocking solution was sucked up, and anti-GB1 antibody (1:1000, Abcam, USA, ab55051) and anti-5-HT antibody (1:1200, Abcam, USA, ab66047) were added to incubate for 1 h at room temperature and then overnight at 4°C. After washing three times in 1x PBS, the slices were incubated in the dark with secondary antibodies (rabbit anti-mouse IgG, 1:300, Abcam, USA, ab150125; rabbit anti-goat IgG, 1:300, Abcam, USA, ab6738) at room temperature for 2 h. The slices were washed again three times, placed on the slide and drop the anti-fade fluorescence mounting medium (Thermo Fisher Scientific, USA), and covered with the slide. After air-drying in the dark, the slides were observed using a confocal microscope (Zeiss, Germany).
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