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7 protocols using prolong gold antifade mountant without dapi

1

Immunohistochemistry of Paraffin-Embedded Tissues

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For serial sections cut at 7 μm in thickness, tissue samples were fixed in 2% PFA overnight at 4°C, dehydrated, and embedded in paraffin. Paraffin slides were first rehydrated to further proceed with antigen retrieval in citrate solution (DAKO, S1699) at 100°C for 20 min. If necessary, then 0.1% hydrogen peroxide was added to methanol to block endogenous peroxidases. The sections were blocked with the appropriate serum (DAKO) and incubated overnight with the following antibodies: rat anti-CD31 (BD Pharmingen, 550274; 1:50), rat anti-F4/80 (Serotec, MCA497F; 1:100), rabbit anti-pimonidazole (Hypoxyprobe, PAb2627AP; 1:100). Appropriate secondary antibodies were used: Alexa Fluor 488–, Alexa Fluor 647–, or Alexa Fluor 568–conjugated secondary antibodies (Molecular Probes; 1:200), biotin-labeled antibodies (Jackson ImmunoResearch; 1:300) and, when necessary, tyramide signal amplification (TSA) system amplification [fluorescein, Cy3, or biotin/3,3′-diaminobenzidine (DAB)] (PerkinElmer, Life Sciences) were performed according to the manufacturer’s instructions. Hoechst solution (Thermo Fisher Scientific, H3570; 1:1000) was used to visualize nuclei. Whenever sections were stained in fluorescence, ProLong Gold Antifade Mountant without DAPI (Invitrogen, P36930) was used. Microscopic analysis was done with an Olympus BX41 microscope and CellSense imaging software.
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2

HUVEC Immunofluorescence Staining Protocol

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Eighteen-millimeter glass coverslips were coated with 0.2% gelatin for 1 hour at RT. Subsequently, gelatin-coated coverslips were exposed to 2.5% glutaraldehyde in PBS for 10 min at RT, followed by 70% ethanol for 30 min at RT. After washing with PBS, active aldehyde groups were neutralized with 2 mM glycine in PBS overnight at 37°C. Glycine was removed and the coverslips were washed with PBS before seeding the HUVECs. HUVECs were fixed in 4% PFA for 10 min at 4°C and blocked and permeabilized with blocking buffer [PBS supplemented with 0.3% Triton X-100 and 3% bovine serum albumin (BSA) fraction V] for 1 hour at RT. The following primary antibodies diluted in blocking buffer were incubated overnight at 4°C: goat anti-human TRAIL (R&D, AF375; 1:25), rabbit anti–Ki-67 (Abcam, ab15580; 1:1000) and mouse anti–NF-κB (Cell Signaling Technology, 6956; 1:400). Appropriate secondary antibodies were used: Alexa Fluor 488–, Alexa Fluor 647–, or Alexa Fluor 568–conjugated secondary antibodies (Molecular Probes; 1:200). Hoechst solution (Thermo Fisher Scientific, H3570; 1:1000) was used to visualize nuclei. Coverslips were mounted with ProLong Gold Antifade Mountant without DAPI (Invitrogen, P36930). Microscopic analysis was done with an Olympus BX41 microscope and CellSense imaging software.
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3

Immunofluorescence Analysis of Intracellular Organelles

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Cells seeded on coverslips were washed with 1 x PBS (1X) and fixed in 4% PFA (8 min, RT). After washing with 1 x PBS (3X), cells were permeabilized and blocked in 1 x PBS, 20% FBS, 0.25% saponin (30 min, RT). Coverslips were washed with 1 x PBS (3X) and incubated with anti-RAB5, anti-RAB7, anti-RAB11, anti-LC3 or anti-LAMP1 primary antibodies and phalloidin-rhodamine diluted in 1 x PBS, 2% FBS (60 min, RT), and then washed with 1 x PBS (3X) and incubated with Cy5-conjugated goat anti-rabbit secondary antibodies diluted in 1 x PBS, 2% FBS (60 min, RT). Stained coverslips were then washed with 1 x PBS (3X) and mounted on SuperFrost Plus microscope sides (Thermo Scientific) with ProLong Gold Antifade Mountant without DAPI (Invitrogen). Samples were imaged with Perkin Elmer Ultraview confocal spinning disk microscope equipped with Volocity software and a 20X/1.3 NA air objective. Images were analyzed with FIJI (NIH) [52 (link)] and figures were prepared using Inkscape (v1.0.1).
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4

Quantifying Autophagy and Lysosomes

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Cells seeded on coverslips were washed with 1 x PBS (1X) and fixed in 4% PFA (8 min, RT). After washing with 1 x PBS (3X), cells were permeabilized and blocked in 1 x PBS, 20% FBS, 0.25% saponin (30 min, RT). Coverslips were washed with 1 x PBS (3X) and incubated with anti-LC3 or anti-LAMP1 primary antibodies and phalloidin-rhodamine diluted in 1 x PBS, 2% FBS (60 min, RT), and then washed with 1 x PBS (3X) and incubated with Cy5-conjugated goat anti-rabbit secondary antibodies diluted in 1 x PBS, 2% FBS (60 min, RT). Stained coverslips were then washed with 1 x PBS (3X) and mounted on SuperFrost Plus microscope sides (Thermo Scientific) with ProLong™ Gold Antifade Mountant without DAPI (Invitrogen). Samples were imaged with Perkin Elmer Ultraview confocal spinning disk microscope equipped with Volocity software and a 20X/1.3 NA air objective.
Images were analyzed with FIJI (NIH) and figures were prepared using Adobe Illustrator CS6.
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5

Visualizing Tight Junctions in BeWo Cells

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BeWo cells were treated with forskolin or DMSO for 0, 24, and 72 h before fixation with ice-cold 100% methanol for 20 min at −20 °C and permeabilization in 0.2% Triton X-100 (Sigma) in PBS for 10 min. After blocking with 3% BSA in PBS for 30 min, the coverslips were incubated with mouse anti-zonulae occludens-1 (ZO-1; BD Transduction Laboratories, Z72720), diluted 1:200 in 3% BSA (Sigma, cat. no.: A7906) in PBS for 90 min at room temperature. ZO-1 is a tight junction protein visualizing cell-cell boundary. The cells were then washed in PBS and incubated with goat anti-mouse Alexa Fluor 488 diluted 1:500 in 3% BSA (Sigma, cat. no.: A7906) in PBS for 1 h. For the last 5 min of incubation, 1 μL/mL DAPI (Sigma-Aldrich, cat. no.: D9542) was added for staining of the cell nucleus. Finally, the cells were washed in PBS before mounting on glass slides using ProLong Gold Antifade Mountant without DAPI (Fischer Scientific, cat. no.: P36930). Images were obtained using an Olympus IX73 microscope.
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6

Cryosectioning and Immunostaining of MG

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The 4th MG was collected, embedded in optimal cutting temperature compound (OCT; Tissue-Tek cat.4583), and snap-frozen with liquid nitrogen. 6–8-µm sections were cut using a cryomicrotome (Leica). The sections were fixed with ice-cold acetone (Merck, Cat. 1.00014.2500), blocked with 5% normal goat serum (Jackson ImmunoResearch, Cat. 055-000-121), and stained with the antibodies listed in the Supplementary Table 1 for 30 min at room temperature. After washing with PBS (Gibco, cat. 18912-014) the sections were mounted with ProLong Gold Antifade Mountant with DAPI (4′,6-diamidino-2-phenylindole; Thermo Fisher Scientific, cat. 62249), or the nuclei were stained with Hoechst (Thermo Fisher Scientific, Cat. 62249), and then mounted with ProLong Gold Antifade Mountant without DAPI (Thermo Fisher Scientific, cat. P36930). Images were acquired using a spinning disk confocal microscope (Intelligent Imaging Innovations) with a Plan-Apochromat 20 × /0.8 or 10 × /0.45 objective or LSM780 confocal microscope (Zeiss) with C-Apochromat 40 × /1.2 or C-Apochromat 63 × /1.2 oil objective. Background subtractions, linear brightness and contrast adjustments, and median filtering for reduction of noise were performed with ImageJ software.
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7

Immunofluorescence Localization of Adrenal Cortex Proteins

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Slides with 5 μ serial sections of the human adrenal cortex were deparaffinized. After antigen retrieval in pH 6 citrate buffer and pH 9 Tris buffer respectively, the sections were incubated for 1 h in primary antibodies for CYP11B2 (mouse monoclonal clone 41–17B; 1:100; kindly donated by Dr. Celso Gomez-Sanchez) and PMCA4b (mouse monoclonal clone JA9; Catalog# MA1–914, Millipore; 1:100). After three successive washes in 1X PBS-0.5% Tween (PBS-T), the sections were incubated Alexa Fluor® 647 goat anti-mouse antibody (1:100) for 1 h and with 100 nM DAPI for 5 mins. Following washes in 1X PBS-T, coverslips were mounted using the ProLong™ Gold Antifade Mountant without DAPI (Thermo Fisher Scientific). Sectioned treated with only secondary antibody served as negative controls. An H and E stained section of the adrenal was used to identify the zones.
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