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Mini protean polyacrylamide gel

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The Mini-PROTEAN polyacrylamide gel is a laboratory equipment designed for the separation and analysis of proteins using electrophoresis. It is a compact and versatile system that enables the efficient and high-resolution separation of protein samples.

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6 protocols using mini protean polyacrylamide gel

1

Western Blot Analysis of Membrane Proteins

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Western blot experiments were carried out as previously described (García-Bea et al., 2016 (link)). Briefly, 1 µg total membrane protein was run on 4–20% mini-Protean polyacrylamide gel (Bio-Rad 4561095), in SDS/Tris/glycine buffer (25 mM Tris-HCl, 250 mM glycine, 0.1% SDS) at 100V for 2 h. Proteins were transferred to a PVDF (polyvinylidene difluoride) membrane (25 V overnight) and blocked with 5% skimmed milk in PBST (phosphate buffer containing 0.1% tween 20) for 40 min. The primary and secondary antibody incubations were performed at room temperature in PBST with 2% skimmed milk, for 1 h and 40 min respectively. Enhanced chemiluminescence reagent (GE Healthcare, Fisher Scientific, Loughborough, UK) was added as per the manufacturer’s instructions. The blots were then exposed to film (GE Healthcare) and digitally captured using an AlphaImager3400 system. Details of the antibodies used are given in Table 1.
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2

Protein Lysate Preparation and Analysis

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To prepare protein lysate, tumors and PDX cell lines PCB82 and PCB380 treated with vehicle (control) and tideglusib were lysed in radio immunoprecipitation (RIPA) buffer (89901, Thermo Fisher Scientific) containing both protease and phosphatase inhibitors (Sigma Aldrich, St. Louis, MO). Lysates were homogenized and clarified by centrifugation at 14,000 rpm for 10 minutes. Thirty μg of protein were electrophoresed in 7.5-10% mini protean polyacrylamide gel (4561024, Bio-Rad, Hercules, CA, USA) transferred to PVDF membranes (1620255, Bio-Rad) for immunoblot analysis with anti-GSK3α/β (sc-7291, Santa Cruz Biotechnology, Dallas, TX, USA) (the monoclonal antibody used is raised against the amino acid 1-420 representing the full length GSK3β), anti-Phos-β-Catenin (9561, Cell Signaling, Danvers, MA, USA), anti-β-Catenin (9562, Cell Signaling), anti-MHC (MAB4470, R&D systems, Minneapolis, MN, USA), anti-myogenin (sc-576, Santa Cruz Biotechnology), anti-β-actin (ab8227, Abcam, San Francisco, CA, USA). Blots were developed using FluorChem Q system (92-14095-00, protein simple, San Jose, CA, USA).
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3

Quantifying PD-L1 Protein Expression

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For the assessment of PD-L1 expression (n=4-7), crude membranes were extracted using Mem-PER™ Plus Membrane Protein Extraction Kit (ThermoFisher Scientific) according to the manufacturer's instructions. Equal amounts of protein (10 μg) were resolved in 4-20% Mini-PROTEAN polyacrylamide gel (BioRad, CA, USA) and were subsequently transferred onto a nitrocellulose membrane using a BioRad Turbo Trans system. After blocking (5% non-fat dry milk), membranes were incubated at 4°C overnight with anti-mouse PD-L1 (1:1000, Sino Biological, 50010-732). anti-mouse GAPDH (1:10000, Invitrogen, AM4300) and anti-Na+/K+ ATPase (1:3000, Abcam, ab7671 and 1:1000, Cell Signalling Technology, 3010). This was followed by incubation with secondary antibodies conjugated to horseradish peroxidase (1:10000, rabbit or goat anti-mouse, Jackson ImmunoResearch Inc., PA, USA) at room temperature for 1h. The blots were developed using the ECL kit (Thermo Scientific, Rockford, IL) and imaged by Amersham imager 600 system (GE Healthcare Bio-Sciences, Uppsala, Sweden). Na+/K+ ATPase was used as a loading control. Densitometric analyses were performed using ImageJ 1.51 software (NIH), and the data were normalized relative to appropriate GADPH controls.
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4

Protein Lysate Preparation and Immunoblotting

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To prepare protein lysate, cells were lysed in radio immunoprecipitation (RIPA) buffer (89901, Thermo Fisher Scientific) containing both protease and phosphatase inhibitors (Sigma Aldrich, St. Louis, MO). Lysates were homogenized and clarified by centrifugation at 14,000 rpm for 10 minutes. Thirty μg of protein were electrophoresed in 7.5–10% mini protean polyacrylamide gel (4561024, Bio-Rad, Hercules, CA, USA) transferred to PVDF membranes (1620255, Bio-Rad) for immunoblot analysis with anti-SMARCA4/Brg-1 (sc-17796, Santa Cruz Biotechnology, Dallas, TX, USA), anti-SMARCA2 (ab15597, Abcam, San Francisco, CA, USA), anti-PBRM1 (A301–59A, Bethyl Laboratories, Montgomery, TX, USA), anti-β-actin (ab8227, Abcam, San Francisco, CA, USA), and anti-GAPDH (2118, Cell Signaling Technology, Danvers, MA, USA).
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5

Western Blot Analysis of NPM1 Protein

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One aliquot of the eluate was reduced (37 °C, 1 h) and heat denatured (95 °C, 5 min) after addition of an equal volume of 2× sample buffer (150 mM Tris-HCl, 2% SDS, 30% glycerol, 0.04% bromophenol blue, 20 mM Tris(2-carboxyethyl)phosphine (TCEP)). The samples were separated by SDS–PAGE using 4–15% Mini-PROTEAN polyacrylamide gels (Bio-Rad) and 1× Laemmli buffer at constant voltage (100 V) for 75–90 min. The proteins were transferred onto a 0.2-µm PVDF membrane using semi-dry transfer (Trans-Blot Turbo Transfer System, Bio-Rad) and 1× Trans-Blot transfer buffer at 1.3 A and 25 V for 10 min. The membrane was blocked with 5% non-fat milk prepared in PBS containing 0.1% Tween (blocking buffer). Mouse monoclonal IgG against NPM1 (sc-32256, Santa Cruz Biotechnology, clone FC-8791) was diluted in blocking buffer (1:2,000 dilution) and incubated with the membrane overnight at 4 °C. The membrane was washed three times and incubated with goat anti-mouse IgG–HRP (sc-2005, Santa Cruz Biotechnology, 1:5,000 dilution) for 1 h at room temperature. The membranes were washed and developed using an enhanced chemiluminescence kit (Bio-Rad) using the manufacturer’s instructions. Two bands (one from native HeLa cell NPM1 at ~45 kDa and one from heterologous expression of SNAP–NPM1 at ~65 kDa) were detected and quantified using ImageJ (version 1.53e).
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6

Acetylation of STAT3 by Entinostat

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J774M cells were treated with entinostat at 0.5 μM, 0.75 μM, or 1 μM for 6 hours and harvested in non-denaturing lysis buffer. Cells were subjected to immunoprecipitation per the manufacturer’s protocol – Abcam 206996. STAT3 antibody was applied to 350ug of lysate in micro-centrifuge tubes and placed on a rotary mixer overnight at 4°C. The next day, protein A/G Sepharose ® beads were applied and the mixture was placed on the rotary mixer for one hour at 4°C. Following pull-down of STAT3 samples were subjected to gel electrophoresis on 4–20% precast mini-protean polyacrylamide gels (Bio-Rad) and transferred onto nitrocellulose membranes. Proteins of interest were detected using acetylated lysine (1:1000, Cell Signaling 9441S) and STAT3 (1:1000, Cell Signaling 12640S). After incubation with conjugated secondary antibodies (Bio-Rad), membranes were exposed to chemiluminescence according to manufacturer’s instructions (Thermo Fisher Scientific) and exposed to film. Quantitative measurements were performed using ImageJ and GraphPad (Prism 7) software.
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