The largest database of trusted experimental protocols

Amazon speed ion trap mass spectrometer

Manufactured by Bruker
Sourced in United States, Germany

The AmaZon Speed ion trap mass spectrometer is a high-performance analytical instrument designed for the detection and identification of a wide range of chemical compounds. It utilizes an ion trap mass analyzer to provide precise mass measurements and fragmentation data, enabling the characterization of complex samples. The core function of the AmaZon Speed is to provide accurate mass spectrometric analysis for applications in various fields, such as chemical analysis, environmental monitoring, and life sciences research.

Automatically generated - may contain errors

7 protocols using amazon speed ion trap mass spectrometer

1

Label-Free Quantification of Urine Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
To prepare samples for label-free LC-MS/MS quantification, the digested samples were dissolved in 0.1% formic acid in H2O and separated on a nanoACQUITY system (Waters Corporation, Milford, MA, USA). All pooled urine samples were run in triplicate. The samples were injected into a nanoACQUITY UPLC column (1.7 µm BEH, 75 µm × 200 mm C18) at a flow rate of 300 nl/min. The column temperature was maintained at 40°C. The LC gradient (1–50% B in 70 min, 50–90% B in 5 min, followed by 15 min on 90% B) was performed using 0.1% formic acid in H2O as solvent A and 0.1% formic acid in ACN as solvent B. The eluting peptides were analyzed directly via MS/MS on an amaZon speed ion trap mass spectrometer (Bruker Corporation, Billerica, MA, USA) equipped with a captive-electrospray ion source. The positive mode was used with a spray voltage of 1,300 V and the capillary temperature was set at 150°C. Mass spectra were acquired from 400–1,400 m/z using parameters optimized at 922 m/z with a target of 500,000 set for ion charge control and a maximum acquisition time of 100 msec. The scan range was 50–3,000 m/z. MS/MS data were processed by Bruker Compass 1.4 software (Bruker Corporation).
+ Open protocol
+ Expand
2

Phytohormone Quantification by LC-MS/MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phytohormones were measured using a Thermo Scientific Dionex UltiMate 3000 system (Thermo Fisher Scientific Inc.) linked to an amaZon speed-ion trap mass spectrometer (Bruker, Billerica, MA, USA) equipped with electrospray ionization (ESI). Salicylic acid and jasmonic acid were separated using an ODS column (AQUITY UPLC BEH shield RP18, 1.7 μm, 2.1 × 100 mm, Waters, BA, UK) with a biphasic solvent system consisting of 0.1% (v/v) formic acid in ddH2O (A) and 100% acetonitrile (B) at a 0.3 mL min−1 flow rate. The linear gradient was set according to the following profile:0 min, 100% A; 2 min, 60% A + 40% B; 5 min, 40% A + 60% B; 13 min, 100% B, and then kept for 2 min and equilibrated for 5 min before the next injection. The injection volume used was 20 µL. The column oven temperature was set to 40 °C. The mass spectrometer parameters were as follows: 4.5 kV capillary; 500 V endplate offset voltage; 40.0 psi nebulizer pressure; 8.0 L min1 dry gas, 230 °C dry temperature. The full scan was set at 40–300 m/z. In negative mode, ESI-MS/MS was operated in multiple reaction monitoring (MRM). MRM was set at 137–93 m/z to detect salicylic acid and 209–165 m/z to detect jasmonic acid.
+ Open protocol
+ Expand
3

Comprehensive Soil Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
A prominence HPLC instrument (Shimadzu, Kyoto, Japan) was used for chromatographic purification. A Nexera X2 HPLC/UHPLC system (Shimadzu, Japan) was employed for the quantitative analysis. An amaZon speed-ion trap mass spectrometer (Bruker, Billerica, MA, USA) and an AVANCE-I 600 NMR (Bruker) were used for chemical identification. A Yamanaka-type soil hardness tester from Fujiwara Seisakusho, Ltd. (Tokyo, Japan) and soil moisture sensor kit SM150T from Delta-T Devices (Cambridge, UK) were used for the in-situ soil analysis.
+ Open protocol
+ Expand
4

ESI-MS Analysis of Azathioprine

Check if the same lab product or an alternative is used in the 5 most similar protocols
All mass spectra were acquired using an ESI ion source Bruker Daltonik amaZon speed ion trap mass spectrometer (Bruker Daltonik, Bremen, Germany). The ion source was operated in positive mode with nitrogen as the drying gas, with a flow rate of 5 L/min at 180 °C, nebulizer pressure of 7.5 psi, capillary voltage of 4.5 kV, and end plate offset of 0.5 kV. Optimum ion transfer was achieved by automatically running the system smart parameter setting in order to optimize the ion transfer for the desired m/z value. Charge control of the ion trap was activated with a target value of 200,000 and a maximum accumulation time of 10 ms. Samples of 1 mM azathioprine in methanole were injected directly into the mass spectrometer at a flow rate of 180 μL h−1. Mass spectra were recorded for m/z values between 50 and 380 at 5200 amu/s in maximum resolution scan mode and ten scans were averaged into one mass spectrum.
+ Open protocol
+ Expand
5

Mass Spectrometry Analysis of BTZ-DNA Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mass spectra were recorded using an ESI ion source Bruker Daltonik amaZon speed ion trap mass spectrometer (Bruker Daltonik, Bremen, Germany). The ion source was operated in positive mode with nitrogen as the drying gas, with a flow rate of 5 L min−1 at 180 °C, a nebulizer pressure of 7.5 psi, a capillary voltage of 4.5 kV, and an end-plate offset of 0.5 kV. Optimum ion transfer was achieved by automatically running the system smart parameter setting in order to optimize the ion transfer for the desired m/z value. Charge control of the ion trap was activated, with a target value of 200,000 and a maximum accumulation time of 10 ms. Samples of 100 µM BTZ in methanol were injected directly into the mass spectrometer at a flow rate of 180 µL h−1. Mass spectra were recorded for m/z values between 50 and 750 at 5200 a.m.u. s−1 in maximum-resolution scan mode, and 10 scans were averaged into one mass spectrum.
The acidic digestion procedure of DNA before and after incubation with BTZ consist in the mechanical removal of the DNA film from the electrode surface. The DNA film, weighing about 350 µg (10 µL drop containing 35 mg mL−1 of dsDNA), was treated with HClO4 9 M during 10 min. Then, the digestion was stopped by neutralization with NaOH 9 M. All digested DNA samples were diluted with purified water and methanol and subjected to MS spectrometry.
+ Open protocol
+ Expand
6

Multi-Instrument Analysis of Soil Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The EYELA multi-shaker MMS-type and centrifugal evaporators were obtained from Tokyo Rika Kikai (Tokyo, Japan) and Sakuma Seisakusho Co., Ltd. (Tokyo, Japan). A SpectraMax iD5 microplate reader (Molecular Devices, San Jose, CA, USA) was used for the in vitro assays. A Nexera X2 HPLC/UHPLC system (Shimadzu, Kyoto, Japan) was used for quantitative chromatographic analysis. A Bruker amaZon Speed Ion-Trap Mass Spectrometer (Billerica, MA, USA) was used for chemical identification. For the in situ soil analysis, a soil moisture sensor kit SM150T (Delta-T Devices, Cambridge, UK) and a Yamanaka-type soil hardness tester (Fujiwara Seisakusho, Tokyo, Japan) were used. Soil macronutrients were analyzed using an EW-THA1J soil analyzer (Air Water Biodesign, Osaka, Japan).
+ Open protocol
+ Expand
7

Lipid Mapping via LESA-MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
A further set of samples was analyzed by LESA (Advion, Ithaca, NY) coupled to an amaZon Speed ion trap mass spectrometer (Bruker Daltonics, Billerica, MA). Sampling locations were selected with spacing of 1 mm in x and y dimensions to ensure there was no overlap between points. The maximum number of sampling locations was selected per sample region (between 4 and 13). Tumor/normal regions were determined by an expert pathologist on a serial H&E section. In this work, we used an extraction/ESI solvent system previously reported for lipid analysis (15/35/50 chloroform/methanol/isopropanol, with 7.5 mM ammonium acetate) (33 (link)). Solvent (1 μL) was aspirated from a reservoir into a conductive pipette tip. The tip relocated to a pre-defined position above the sample and dispensed 0.7 μL solvent onto the surface. The liquid microjunction was maintained for 5 seconds to allow soluble analytes to dissolve before 1 μL was re-aspirated and injected into the mass spectrometer via a nano-electrospray ionization source, with a gas pressure of 0.3 psi and a tip voltage of 1.4 kV. Mass spectra were acquired for 1 minute, in the positive ion mode, with an m/z range of 100 – 1100 and the ion trap target tuned to m/z 700.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!