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178 protocols using avicel ph 101

1

Assessing LPMO Activity on Chitin and Cellulose

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LPMO activity was primarily assessed for β-chitin (10 g/L), using 1 µM enzyme and 1 mM ascorbic acid in 50 mM sodium phosphate buffer, pH 6.0. Unless stated otherwise, all reactions were incubated in 2 mL Eppendorf tubes at 800 rpm in an Eppendorf thermomixer set to 40 °C (Eppendorf, Hamburg, Germany). Extracted and deproteinized β-chitin from squid pen (batch 20,140,101, France Chitin, Orange, France), was ball-milled and sieved to produce separate fractions of particles with 75–200 μm and 500–850 μm size. Activity was also tested towards 10 g/L shrimp shell (Pandalus borealis) α-chitin [purchased from Chitinor AS; Senjahopen, Norway; demineralized by hydrochloric acid treatment and subsequently deproteinized by alkaline (NaOH) treatment] and cellulosic substrates such as 5 g/L phosphoric acid swollen cellulose (PASC; prepared from Avicel PH-101 as described by Wood83 (link)); 10 g/L Avicel PH-101 (Sigma-Aldrich, St. Louis, MO, USA) and 1 g/L bacterial microcrystalline cellulose84 (link) (kindly provided by Dr. Priit Väljamäe, University of Tartu). Furthermore, activity was tested towards chitin oligomers (DP5-6, 2 mM) purchased from Megazyme (Bray, Ireland), and peptidoglycan isolated from Streptomyces sp. (3 g/L) purchased from Merck (Darmstadt, Germany).
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2

Cellulose Hydrolysis and Fermentation

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Avicel® PH-101 (Sigma), microcrystalline cellulose and dissolving pulp (DP, pure cellulosic substrate less than 0.5 % lignin, less than 3 % xylan) [35 (link)] from Canadian Ponderosa Pine were used as substrate for cellulolytic hydrolysis and SSF by the cellobiose-utilizing C. glutamicum strains. Each cellulolytic hydrolysis and SSF was carried out in CgXII medium (pH 7.0) with 1 % (w/v) Avicel® PH-101 or 1 % (w/v) dissolvping pulp at 30 °C and 200 rpm. Celluclast 1.5 L (Sigma; Cat C2730) [75 filter paper unit (FPU)/g-glucan] was used as the cellulolytic enzymes for saccharification of Avicel® PH-101 or DP. Cellulase actitivity of the Celluclast 1.5 L was determined by the standard filter paper assay with the 3,5-dinitrosalicylic acid (DNS) method [36 ]. One unit of cellulose activity is defined as the amount of enzyme required to release 1 μmol of reducing sugar per mint at pH 4.8 and 50 °C. The enzyme activity of Celluclast 1.5 L was measured to be 28 FPU/mL. A colorimetric method based on the phenol–sulfuric acid reaction was used to determine the amount of residual substrate during SSF by quantifying total sugars [37 (link)].
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3

Preparation of Oxidized Cellulose

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Avicel PH101 (Sigma-Aldrich) was washed four times in MilliQ water and three times in 50 mM acetate buffer pH 5.0 (henceforth called standard buffer). Phosphoric acid swollen cellulose (PASC) was produced from Avicel PH101 (Sigma-Aldrich) as described previously (59 ). The PASC suspension was divided into two stocks; one was washed three times in standard buffer and resuspended in standard buffer, this stock is referred to as PASC, the other stock was treated with CuSO4 as described below and referred to as oxidized PASC.
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4

Cellulose I Modification with PEG

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Avicel PH101 (Merck, Darmstadt, Germany) was used as a source of cellulose I. Tin(II) 2-ethylhexanoate (Merck) was used as a catalyst during modification with polyethylene glycol, with Mw = 1000 (Merck). Pure NaOH (Chempur, Piekary Śląskie, Poland) was used for the preparation of a 16% solution—the mercerizing agent.
Component A was a mixture of polyols with additives, which was composed of the following: a polyol mixture of various lengths of aliphatic chains (up to 60%), flame retardant (tri (2-chloro-1-methylethyl) phosphate) (up to 15%), a low-boiling organic foaming compound with acceptable ODW and ODP indicators (up to 10%), a catalyst (N,N-dimethylcyclohexylamine) (up to 5%), stabilizers (up to 5%), and water (up to 5%).
Component B was polymeric 4,4-diphenylmethane diisocyanate (PMDI) with the following properties: content of functional groups NCO = 31–32%; viscosity (at 25 °C) = 210 (mPa/s); density = 1.23 (g/cm3).
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5

Characterization of Biomass Polysaccharides

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All chemicals used were of the highest purity
available. Aqueous solutions were prepared in deionized water with
an electrical resistivity of ≥18 MΩ cm at 25 °C.
Cellobiose (C7252) was purchased from Merck. Cello-oligosaccharides
and hemicelluloses were purchased from Megazyme (Wicklow, Ireland):
cellotriose (O-CTR-50MG), cellotetraose (O-CTE-50MG), cellopentaose
(O-CPE-20MG), β-glucan from barley (high viscosity, P-BGBH),
β-glucans from barley (low viscosity, P-BGBL), glucomannan (GM)
from konjac tubers (low viscosity, P-GLCML), xyloglucan from tamarind
seeds (P-XYGLN), galactan from lupin seeds (P-GALLU), lichenan from
icelandic moss (P-LICHN), arabinoxylan from wheat flour (medium viscosity,
P-WAXYM), mannan (1,4-β-d-Mannan, P-MANCB), xylan from
birchwood (partially acetylated, P-ACXYL), xylan from beechwood (P-XYLNBE-10G),
and curdlan (P-CURDL). Phosphoric acid-swollen cellulose (PASC) was
prepared according to a published protocol63 (link) from microcrystalline cellulose (MCC) (d = 50 μm,
11365, Avicel PH-101, Merck). Crystalline nanocellulose (CNC, d = 10–20 nm × l = 300–900
nm, NG01NC0101) was purchased from Nanografi Nanotechnology (Ankara,
Turkey). Kraft lignin (370959) and horseradish peroxidase (77332)
were purchased from Merck.
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6

Sequential Oxidative Extraction of Cellulose

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The analytical grade chemicals used for the sequential oxidative extraction (SOE) of ALO and ACO extraction were ammonium hydroxide (30%-33% NH 3 in H 2 O, CAS #: 1336-21-6), hydrogen peroxide (30% H 2 O 2 , CAS #: 7722-84-1), and formic acid (90% HCOOH in H 2 O, CAS #: 64-18-6). Meanwhile, the analytical grade chemicals used for the analysis (i.e., chemical composition, sugar content, and inhibitor determination analysis) were D (+)-glucose, D(+)-xylose, L(+)-arabinose, sulfuric acid (H 2 SO 4 , 95%-99%), 5-hydroxymethyl-2furaldehyde (99%), acetic acid, and furfural, which were acquired from Sigma-Aldrich (M) Sdn. Bhd. (Sigma-Aldrich, St. Louis, MO). Two celluloses were used as comparison in this study, which were Avicel® PH-101, a pure cellulose obtained from Merck (Cellulose powder, CAS#9004-34-6) and industrial produced NFC from plant biomass, purchased from Waris Nove (M) Sdn Bhd, Kuantan, Pahang.
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7

Cellulose Paper Characterization and Analysis

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Pure cellulose paper samples
(Whatman filter
paper N° 1) were obtained from Whatman (Maidstone UK). Gellan
gum was a KELCOGELCG-LA product obtained by CP Kelco (Atlanta Georgia,
USA). Cellulase [(≥ 0.3 U/mg; EC 3.2.1.4 from Aspergillus Niger)], D (+)-glucose monohydrate, glucose
oxidase, Avicel PH 10.1, and sulfuric and hydrochloric acid were obtained
from Merck (Merck KGaA, Darmastadt, Germany, Europe). All reagents
were of analytical grade and used without further purification. In
the preparation, solutions of bidistilled water (Millipore, Merck,
KGaA, Germany) was used. The book “Breviarium Romanum
ad usum fratrum minorum
” (called, in the following, Breviarium) of 1738 is from a private collection.
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8

Cellulose Pulp Characterization

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A sample of industrial cellulose pulp (bleached eucalyptus kraft pulp, BEKP, DP ≈ 1100) was kindly supplied by Celtejo S.A. cellulose industry. Microcrystalline cellulose (Avicel®, PH-101, ~50 µm particle size, DP ≈ 240, Merck KGaA, Darmstadt, Germany), 1,1,3,3-Tetramethylguanidine (TMG, 99%, TCI, Zwijndrecht, Belgium), acetic acid (TCI, >99.5%, Zwijndrecht, Belgium), propionic acid (TCI, >99%, Zwijndrecht, Belgium), formic acid (TCI, >98%, Zwijndrecht, Belgium), dimethyl sulfoxide (DMSO, 99.9%, Fisher-Sci,, Loughborough, UK), dimethylformamide (DMF, HPLC grade ≥99.5%, Fisher Sci,, Loughborough, UK), and deuterium oxide (D2O, 99.9% deuterium, Eurisotop, Cambridge, UK) were used as received. Deionized water was obtained by reverse osmosis.
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9

Measuring Yeast Cellulolytic Activity with PASC

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PASC was prepared from Avicel PH-101 (Sigma-Aldrich) as previously described (Den Haan et al. 2007 (link)). The cellulolytic activity of yeast cells was measured using PASC according to a previously described method with slight modifications (Liu et al. 2016) (link). Briefly, the reaction mixture contained 1% (w/v) PASC, 50 mM sodium citrate buffer (pH 5.0), 100 mM methyl glyoxal (Nacalai Tesque, Inc., Kyoto, Japan), and 100 g wet cell/L of yeast cell suspension. The reaction was carried out at 50 °C for 60 min while rotating at 35 rpm using a heat block (Thermo Block Rotator SN-06BN; Nissin, Tokyo, Japan) and the glucose concentration in the supernatant was quantified using LabAssay Glucose (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan). One unit of cellulolytic activity was defined as the activity that released 1 μmol of glucose per min.
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10

Wheat Kernel Composition Analysis

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Kernels of the hard wheat (Triticum aestivum L.) cultivar Evina were kindly supplied by Limagrain (Avelgem, Belgium). Unless specified otherwise, all chemicals, solvents, and reagents were at least of analytical grade and purchased from Sigma-Aldrich (Overijse, Belgium). Used enzymes (with units as defined by Sigma-Aldrich) were -amylase (Termamyl® 120) from Bacillus licheniformis (type XII-A, saline solution, ≥500 units/mg protein, reference A3403) and papain from Carica papaya (powder, ≥3 units/mg, reference 76220). The enzyme preparations were free from xylanase activity as determined by the Xylazyme AX method (Megazyme, Bray, Ireland). Deuterium oxide (D 2 O) had an isotopic purity of 99.9 atom% D (Sigma-Aldrich reference 151882).
The cellulose used was microcrystalline Avicel PH-101 (Sigma-Aldrich reference 11365).
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