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8 protocols using m20005

1

Protein Expression Analysis in Mouse Lung

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Total proteins were extracted with RIPA lysis containing protease inhibitors from mouse lung tissues and Raw264.7 cells. And, protein samples were separated through 10–13% SDS-PAGE, transferred to PVDF membranes. The membranes were incubated with primary antibodies: total-STAT1 (1:1000, PTM-5754, PTM Bio, Hangzhou, China), Phospho-STAT1 (1:1000, 340797, ZenBio, Chengdu, China), total-STAT6 (1:1000, 380957, ZenBio), Phospho-STAT6 (1:500, sc-136019, Santa Cruz), iNOS (1:1000, ab178945, Abcam), Arg1 (1:1000, #93668S, Cell signaling technology), Caspase1 (1:500, sc-392736, Santa Cruz), MT1/2 (1:500, sc-398788, Santa Cruz), β-Tublin (1:5000, M20005, Abmart, Shanghai, China) and GAPDH (1:5000, ab181602, Abcam) overnight at 4℃. After incubated with Goat Anti-Rabbit IgG second antibody (1:5000, M21003, Abmart), the membranes were visualized by Odyssey infrared imaging system (Tanon, Shanghai, China).
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2

Immunoblotting Analysis of Glycogen Metabolism

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Cells were lysed in cell lysis buffer containing a protease inhibitor cocktail at 4 °C for 30 min. The lysates were denatured, subjected to SDS-PAGE, and transferred to PVDF membranes (Thermo, Waltham, MA, USA). The membranes were blocked and reacted with primary antibodies overnight at 4 °C. Horseradish peroxidase (HRP)-conjugated secondary antibodies (AS003, ABclonal, Woburn, MA, USA) were used for subsequent incubation for 2 h at room temperature. The protein bands were visualized using the enhanced chemiluminescence (ECL) system (Amersham Imager 600). Specifically, such immunoblots were performed with the following antibodies: anti-Glycogen Synthase 1 (GYS1) Rabbit pAb (A2519, ABclonal, Woburn, MA, USA); anti-Glycogen Phosphorylase (PYGL) Rabbit pAb (A6710, ABclonal, Woburn, MA, USA); and anti-β-tubulin mAb (M20005, Abmart, Shanghai, China)
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3

Investigating Eukaryotic Protein Regulation

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The primary antibodies used are: mouse anti-eIF2α (sc-133132 Santa Cruz Biotechnology, 1:1000 for western blot); rabbit anti-phospho-eIF2α (9721 Cell Signaling Technology, 1:1000 for western blot); rabbit anti-BMAL1(14020 Cell Signaling Technology, 1:1000 for western blot); mouse anti-GAPDH (60004 Proteintech, 1:1000 for western blot); mouse anti-β-tubulin (M20005, Abmart; 1:3000 for western blot); rabbit anti-PABP1 (ab2060, Abcam, 1:100 for immunofluorescence), rabbit anti-YB1 (ab76149, Abcam, 1:200 for immunofluorescence); and rabbit anti-cleaved-caspase-3 (9661 Cell Signaling Technology, 1:200 for immunofluorescence). The drug used was sodium arsenite (S7400-100G, Sigma, 100 mg/kg for mouse and 20 or 50 μM for cells).
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4

Comprehensive Western Blot Analysis

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Western blot protocol was performed as previously described.22 (link) Primary antibodies included anti-ACOT7 (1:7000, 15972-1-AP, Proteintech, China), anti-KLF13 (1:1000, 18352-1-AP, Proteintech, China), anti-GAPDH (1:7000, 10494-1-AP, Proteintech, China), anti-β-tubulin (1:5000, #M20005, Abmart), anti-cyclin D1 (1:1000, 26939-1-AP, Proteintech, China), anti-CDK2 (1:1000, 10122-1-AP, Proteintech, China), anti-CDK4 (1:1000, 11026-1-AP, Proteintech, China), anti-E-cadherin (1:7000, 20874-1-AP, Proteintech, China), anti-N-cadherin (1:7000, 22018-1-AP, Proteintech, China) and anti-vimentin (1:5000, ab92547, Abcam). The secondary antibodies included HRP-conjugated Affinipure goat anti-rabbit IgG (H+L) (1:7000, SA00001-2, Proteintech, China) and HRP-conjugated Affinipure goat anti-mouse IgG (H+L) (1:7000, SA00001-1, Proteintech, China).
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5

Western Blot Analysis of ACE2 in Rat Brain Tissues

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Brain tissues from juvenile and aged SD rats were lysed in RIPA buffer (Solarbio, Beijing, China), following this protease and phosphatase inhibitors were added and then the sample was denatured at 100°C for 15 min. The protein samples were then separated using 10% sodium dodecyl-sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride (PVDF) membranes. Next, PVDF membranes were blocked with 5% skim milk powder solution for 1 h, incubated with primary antibodies, including anti-ACE2 antibody (1:1000, Proteintech, 21115-1-AP) and anti-Tubulin antibody (1:10000, Abmart, M20005) overnight, followed by secondary antibodies (1:5000) for 2 h at room temperature. The bands were visualised using an ECL kit chemiluminescence reagent (Billerica Millipore, MA, United States). Protein band signals were detected using the Chemidoc detection system (Bio-Rad, Hercules, CA, United States) and quantified by the ImageJ software (National Institutes of Health, United States).
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6

Comprehensive Western Blot Analysis of Cellular Proteins

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Total cellular proteins were extracted with RIPA lysis buffer (Servicebio) and measured using the BCA protein quantification kit (Beyotime). Equivalent amounts of protein samples were loaded in each lane and separated by 10% sodium dodecyl sulphate‐polyacrylamide gel electrophoresis (SDS‐PAGE). Subsequently, the samples were transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% skim milk, the membranes were incubated with a primary antibody overnight at 4°C. The primary antibodies were as follows: MTHFD2 (1:5000, PHF6156, Abmart); PD‐L1 (1:500, T55980, Abmart); p‐JAK1 (1:2000, TP56310, Abmart); JAK1 (1:2000, T57173, Abmart); p‐STAT3 (1:1000, T56566, Abmart); STAT3 (1:2000, T55292, Abmart); Bcl‐2 (1:500, WL01556, Wanleibio); Bax (1:1000, WL01637, Wanleibio); Cyclin D1 (1:5000, 60186‐1‐Ig, Proteintech) and β‐Tubulin (1:5000, M20005, Abmart). Endogenous β‐tubulin was performed as an internal control protein for WB analysis. After washing with tris‐buffered saline with 0.1% Tween‐20 (TBST), the membranes were incubated with secondary antibodies for 1 h at room temperature. All bands were measured using an enhanced chemiluminescence (ECL) system kit (Servicebio) and analysed using ImageJ software. The statistical graphs about WB was presented in Figure S1.
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7

Immunoblotting and Immunofluorescence Assays

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The primary antibodies used are: rabbit anti-SCAMP5 (ab3432, Abcam;1:500 for WB); rabbit anti-LC3B (L7543, Sigma-Aldrich; 1:3000 for WB); mouse anti-p62/SQSTM1 (ab56416, Abcam; 1:2000 for WB); rabbit anti-TFEB (13372-1-AP, Proteintech; 1:1000 for WB); mouse anti-α-synuclein (610787, BD Biosciences; 1:1000 for WB); rabbit anti-huntingtin (5656P, Cell signaling; 1:1000 for WB); mouse anti-GM130 (610822, BD Biosciences; 1:300 for IF); mouse anti-Giantin (ab37266, Abcam; 1:300 for IF); rabbit anti-ERGIC53 (sc-66880, Santa Cruz; 1:100 for IF); rabbit anti-Calnexin (ab22595, Abcam; 1:2000 for WB); mouse anti-CD63 (ab8219, Abcam; 1:1000 for WB); mouse anti-DYKDDDDK-Tag (FLAG) (M20008, Abmart; 1:3000 for WB; 1:300 for IF; 1:200 for IP); goat anti-DYKDDDDK-Tag (FLAG) (NB600-344, NOVUS; 1:100 for IF); mouse anti-HA-Tag (M20003, Abmart; 1:200 for IP); mouse anti-GFP-Tag (M20004, Abmart; 1:2000 for WB); mouse anti-β-tubulin (M20005, Abmart; 1:3000 for WB); mouse anti-β-actin (M30002, Abmart; 1:2000 for WB).
The drugs used are: Rapamycin (553210, Merck, 100nM); Bafilomycin A1 (196000, Merck, 10-50nM); MG132 (474790, Merck, 3-5μM); Cycloheximide (C7698, sigma, 100μg/ml); Tetanus toxic (T3194. Sigma-Aldrich, 2nM); BrefeldinA (S1536, Beyotime, 2μM).
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8

Antibodies for Protein Detection in Cells

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Copper sulfate (CuSO 4 ) was purchased from Aladdin Reagents (C141450; Shanghai, China). The following antibodies were used for immunoblotting analysis: anti-rabbit ferredoxin 1 (Fdx1; for western blotting, 1:1000, ab108257; Abcam, Cambridge, MA, USA), anti-rabbit Fdx1 (for immunohistochemistry, 1:100, YT8131; Immunoway, Newark, CA, USA), anti-rabbit solute carrier family 31 member 1 (Slc31a1; 1:1000, A0773; ABclonal, Wuhan, China), anti-rabbit dihydrolipoamide acetyltransferase (Dlat; 1:1000, A8814; ABclonal), antirabbit occludin (1:1000, ab216327; Abcam), anti-rabbit claudin-11 (1:1000, A12478; ABclonal), anti-rabbit zonula occludens-1 (ZO-1; 1:5000, 21773-1-AP; Proteintech, Wuhan, China), anti-mouse β-actin (1:1000, GB11001; Servicebio, Wuhan, China), and anti-mouse β-tubulin (1:5000, M20005; Abmart, Shanghai, China).
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