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5 protocols using recombinant human trail apo2 ligand

1

Antibody and Chemical Sources for Cell Signaling

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The antibodies and chemicals were obtained from the following resources; anti-PARP (#556362), anti-XIAP (#610716), anti-FADD (#610399), anti-RIP1 (#610459), anti-p53 (#554147) and anti-p21 (#556430) antibodies (BD Biosciences, San Diego, CA, USA); anti-caspase-3 (#9662), anti-caspase-8 (#9746), anti-caspase-9 (#9508) and anti-Bid (#2002) antibodies (Cell signalling Technology, Beverly, MA, USA); anti-caspase-10 (M059-3) antibody (MBL, WOBURN, MA, USA); anti-Bcl-XS/L (sc-271121), anti-survivin (sc-17779), anti-TRAF2 (sc-876), anti-GFP (sc-9996) and anti-HA (sc-805) antibodies (Santa Cruz, CA, USA); anti-c-FLIP (ALX-804-961) antibody (Enzo Life Sciences, Farmingdale, NY, USA); anti-cIAP1/2 (#07-759) antibody (Upstate Biotech, Waltham, MA, USA); anti-DR5 (#ab181846) antibody (Abcam, Cambridge, UK); anti-DR4 (NB100-56528) antibody (Novus, Centennial, CO, USA); anti-TurboGFP (PA5-22688) antibody (Thermo scientific, Waltham, Massachusetts, USA); anti-actin (A2066), anti-flag (F3165, 1:2,000 dilution) antibodies (Sigma-Aldrich, St. Louis, MO, USA). the pan caspase inhibitor Z-VAD-FMK, MG-132, TPCA-1 (Calbiochem, San Diego, CA, USA); recombinant TNF (R & D Systems, Minneapolis, MN, USA); recombinant human TRAIL/Apo2 ligand (Peprotech, Rocky Hill, NJ, USA).
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2

Apoptosis Evaluation in Breast Cancer Cells

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Human MDA-MB-231 and MCF-7 cells were purchased from American Type Culture Collection (ATCC) (Manassas, VA). Leibovitz’s L-15 medium, RPMI-1640 medium, Fetal Bovine Serum (FBS) and Penicillin-streptomycin Cocktails were obtained from Thermo Scientific (Rockford, IL). Suberanilohydroxamic acid (SAHA) was purchased from Sigma-Aldrich (St. Louis, MO). Recombinant human TRAIL/Apo2 Ligand was from Peprotech (Rocky Hill, NJ). Muse Cell Cycle kit, Muse Annexin & Dead Cell kit, and Muse Count & Viability kit were from Millipore (Darmstadt, Germany). Human Apoptosis Antibody Array kit was purchased from R&D Systems (Minneapolis, MN). High Pure RNA Isolation kit, Annexin-V-FLUOS staining kit and Transcriptor First Strand cDNA Synthesis kit were obtained from Roche Diagnostics GmbH (Mannheim, Germany). Exprofile Human Cell Cycle Tox and Cancer Related Gene qPCR Array kit and Exprofile Human EGF/PDGF Signaling Related Gene qPCR Array kit were obtained from Genecopoeia (Rockville, MD). Power SYBR Green PCR Master mix, Calcein-AM dye, RIPA Cell Lysis buffer and BCA Protein Assay kit were from Life Technologies (Austin, TX). CellTiter 96AQueous One Solution Cell Proliferation Assay kit was obtained from Promega (Madison, WI). Protease inhibitor and other chemicals were purchased from Sigma-Aldrich (St. Louis, MO).
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3

Human NSCLC Cell Lines Characterization

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The Human NSCLC cell lines NCI-H1975, HCC827 and H358 were obtained from the American Type Culture Collection (ATCC), while PC9 and A549 were obtained from Sigma. These cell lines were chosen based on their expression of mutated genes which are clinically relevant and represent the common heterogeneity of the disease. Cells identity was confirmed by STR analysis. All cells were cultured at 37° C in a humidified 5% CO2 incubator. H1975, PC9, HCC827 and H358 cells were grown in RPMI-1640 medium (Invitrogen) supplemented with 10% heat inactivated fetal bovine serum (FBS) (Perbio Science), 2 mM L-glutamine and 25 mM HEPES. A549 cells were grown in DMEM supplemented with 10% heat inactivated FBS, 2 mM L-glutamine and 25 mM HEPES. Stock Solution (10 mM) of RO3280 (Selleckchem) were prepared in dimethyl sulfoxide (DMSO) and stored at −80° C, further diluted in fresh medium prior to each experiment with the final concentration of DMSO less than 0.1%. Recombinant human TRAIL/Apo2 ligand was purchased from Peprotech and diluted in phosphate buffer saline (PBS).
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4

Expressing Myc-tagged Proteins and Silencing Genes for TRAIL Sensitivity

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For expression of Myc-tagged fusion proteins, cDNA clones were subcloned into pDEST-Myc-tagged vector using the Gateway cloning system (Life Technologies). Cell transfection using X-tremeGENE 9 (Roche) was performed according to the manufacturer’s instructions. After 24 hours of cell transfection, cells were treated for another 24 hours with recombinant human TRAIL/Apo2 ligand (PeproTech) at final concentration of 80ng/ml in MDA-MB-231 and 100ng/ml in MCF-7.
For RNA interference-mediated gene silencing, cells were seeded and exposed to 50 nM of either gene-specific siRNA or non-targeting control siRNA (siLUC), using Lipofectamine RNAiMAX transfection reagent (Life Technologies) for 48 h. For EPSTI1 silencing, IFN-α (Chemicon, Millipore) was added to a final concentration of 1000 U/ml 8 hours before harvesting the cells. TRAIL treatment was conducted in the same conditions as in overexpression assays (see above).
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5

TRAIL Ligand and Death Receptor Analysis

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Recombinant human TRAIL/Apo2 Ligand was purchased from Peprotech (Rocky Hill, NJ, USA). PE-conjugated human CD133/1 antibody was purchased from Miltenyi Biotec (Bergisch Gladbach, Germany). PE-conjugated human DR5 and DR4 antibodies were purchased from BioLegend (San Diego, CA, USA). The following antibodies were used in western blot: anti-NF-κB/p65 1:1000 (Cell Signaling Technology (CST), Danvers, MA, USA), anti-p-NF-κB/p65 1:1000 (CST), anti-IκBα 1:1000 (CST), anti-p-IκBα 1:1000 (CST), anti-cFLIP (cellular FLICE-like inhibitory protein) 1:1000 (Abcam ab167409, Cambridge, MA, USA), anti-caspase-8 1:1000 (CST), anti-caspase-3 1:1000 (CST), anti-DR5 1:1000 (CST), anti-TNFRSF10A (DR4) 1:500 (ABGENT AP13702b, San Diego, CA, USA), anti-GAPDH 1:500 (Boster, Wuhan, China) and anti-β-actin 1:500 (Boster, Wuhan, China).
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