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73 protocols using myd88

1

Western Blot Analysis of Apoptosis Markers

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The rat heart tissue and cultured H9c2 cell line were homogenized in RIPA buffer. Proteins from the homogenate (20 μg/well) were separated on a one-dimensional 4%–10% SDS polyacrylamide gel and transferred to a polyvinylidene membrane (Bio-Rad, Hercules, CA, USA) with a semidry electrotransfer apparatus for 1.5 h at 300 mA. The expression levels of Myd88, c-Myc, cleaved-Bid, p53, Bax, Bcl-2, cleaved-caspase-3, Irak-2, and IL-1R were determined (Myd88, c-Myc, p53, Bax, Bcl-2, and IL-1R; 1:1,000; Abcam, Cambridge, MA, USA; Irak-2; 1:1,000; Cell Signaling Technology, Danvers, MA, USA; cleaved Bid and cleaved-caspase-3; 1:500; WanleiBio, Shenyang, Liaoning Province, China). The immunoblots were visualized by enhanced chemiluminescence (ECL detection kit from GE Healthcare, Chicago, IL, USA).
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2

Paeoniflorin Inhibits TLR4/NF-κB Pathway

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Paeoniflorin was purchased from Shanghai Yuanye Biotechnology Company (Shanghai, China), and TAK-242 was from APExBio (A3850). TLR4, MyD88, NF-κB p65, and β-actin were purchased from Abcam (USA) and those against caspase-3, Bax, and BCL2 were from Abbkine (China). The H9c2 cell line were purchased from the cell resource center of Shanghai Institute of Life Sciences, Chinese Academy of Sciences.
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3

Western Blot Analysis of Protein Expression

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Cell culture lysates were collected into lysis buffer with both protease and phosphatase inhibitors. Equal amounts of protein were separated using pre-cast tris–glycine gels (Invitrogen, Carlsbad, CA), and blotted onto nitrocellulose membranes. After blocking in TBST (10 mM Tris–HCl buffer, pH 8.0, 150 mM NaCl, 0.1% Tween 20) and 5% (w/v) BSA, membranes were treated with an Epac1, TLR4, MyD88, IRAK, TRAF6, TRAM1, IRF3, occludin, and ZO-1 (Abcam, Cambridge, MA) and beta actin (Santa Cruz Biotechnology, Santa Cruz, CA) primary antibodies followed by incubation with secondary antibodies tagged with horseradish peroxidase. Antigen–antibody complexes were visualized with an Azure C500 machine (Azure Biosystems, Dublin, CA) after application of a chemiluminescence reagent kit (Thermo Scientific, Pittsburgh, PA). Western blot band densities were measured using Image Studio Lite software.
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4

Western Blot Analysis of Cellular Proteins

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All samples were collected. For extraction of total cellular protein, tissues were lysed in radioimmunoprecipitation-assay buffer with phenylmethane sulfonyl fluoride. Protein concentration was quantified using a BCA kit (Thermo Fisher Scientific). Proteins were separated and transferred to polyvinylidene difluoride membranes. Membranes were incubated overnight at 4°C with HMGB1, cleaved caspase 3, Bcl2, MyD88, IKKβ, NFκB, and β-actin (1:1,000; Abcam). Thereafter, the membranes were incubated with horseradish peroxidase-labeled antirabbit/mouse secondary antibodies (1:1,000) for 1 hour at room temperature. Finally, membranes were visualized with an enhanced-chemiluminescence kit (Thermo Fisher Scientific). The ratio between the optical density of the protein of interest and β-actin of the same sample was calculated as the relative content of the protein detected.
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5

Rheumatoid Arthritis Synoviocyte Protocol

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FFXHL pills (SFDA approval number Z11020012) was purchased from Beijing Tongrentang Co.,Ltd.Tongrentang Pharmaceutical Factory. Bovine type II collagen (20022), Incomplete Freund’s Adjuvant (IFA) (7002) were bought from Chondrex, Inc. (United States). Dexamethasone was purchased from Guangdong South China Pharmaceutical Group Co., Ltd. (Guangdong, China). Rheumatoid fibroblast-like synoviocyte transformed with SV40 T antigen (MH7A) was obtained from Jennio Biological Technology (Guangzhou, China). RPMI 1640 culture medium (22400071), trypsin, Pencillin-Streptomycin (P/S), and fetal bovine serum (FBS) were bought from Gibco (United States). Enzyme-linked immunosorbent assay (ELISA) were purchased from Sinouk Bio (Bei Jing, China) and Lianke Bio (Hang Zhou, China). TNF-a protein was obtained from PRPTO TECH (United States). TLR4, Myd88, p65, p-p65, IKKα/β, p-JNK1/2/3, JNK1/2/3, were purchased from Abcam (United Kingdom). p-Erk1/2, Erk1/2, p-p38, p38, β-actin, p-IKKα/β, p-IκBα, IκBα, p-Akt, Akt were purchased from CST (United States).
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6

Immuno-blotting for Protein Expression Analysis

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Immuno-blotting for protein analysis has been described earlier [25 (link)]. Following protein separation through a gradient polyacrylamide gel (4–12%) and electro-blotting onto a PVDF membrane, proteins were identified and their expression rate determined by Western-blotting. The following proteins were detected: β-defensin-1, C1qR, ICAM1, ICOS, ICOSL, MYD88, and SOCS (all Abcam, Cambridge, UK). Details of dilution and producers are provided in Table 2.
Membranes were blocked for 1 hour (room temperature) in PBS containing 0.01% Tween-20 and 2% bovine serum albumin. The primary antibodies were added at concentrations indicated in Table 1 and incubated overnight at 4°C. Following 3 washes with blocking buffer, membranes were incubated with secondary species specific antibodies labelled with horse radish peroxidase for 1 hour. Unbound antibody was washed off by 3 washes with blocking buffer and protein bands were visualised by exposure to X-ray films.
GAPDH expression was used to normalize protein expression and estimated changes induced by the different treatments.
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7

TLR4-Mediated Inflammatory Pathway Activation

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RIPA buffer containing protease inhibitors was used to extract proteins from rat spinal cord tissues and BV-2 cells. Protein concentrations were then determined using a BCA Protein Assay Kit (Abcam). Protein samples (20 μg/lane) were separated via 10% SDS-PAGE and the resolved proteins were transferred onto PVDF membranes. Membranes were blocked with 5% bovine serum albumin at room temperature. After blocking, membranes were incubated overnight at 4 °C with primary antibodies against TLR4 (1:1000; Abcam), MyD88 (1:1000; Abcam), p65 (NF-κB) (1:1000; Abcam), p-p65 (phospho-NF-κB) (1:1000; Cell Signaling), NLRP3 (1:1000; Abcam), ASC (1:1000; Affinity Biosciences), caspase 1 (1:1000; Affinity Biosciences), N-GSDMD (1:1000; Abcam), and GAPDH (1:1000; Abcam). Thereafter, they were washed three times with Tris-buffered saline Tween-20. Subsequently, an HRP-conjugated IgG secondary antibody (1:5000; Santa Cruz, Waltham, MA, USA) was added and membranes were incubated at room temperature for 1 h. GAPDH was used as the internal reference. An enhanced chemiluminescence detection kit (Thermo Fisher Scientific) was used to detect the bands, which were then quantified using Gel-Pro Analyzer software (version 4.0; Media Cybernetics, Silver Spring, MD, USA).
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8

Western Blot for STING Signaling

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Equal amounts of proteins were resolved on SDS-polyacrylamide gels and then transferred to polyvinylidene fluoride membranes (Millipore). After blocking with 5% Blocking Reagent, membranes were incubated with various primary antibodies (and appropriate secondary antibodies). The image was resolved using an enhanced chemiluminescence system ECL (Thermo Scientific) and detected by autoradiography (Kodak). Antibodies: rabbit polyclonal antibody against STING was developed in our laboratory as described previously (Ishikawa et al.6 (link)); other antibodies were obtained from following sources: HA (Sigma Aldrich, at 1:10,000 dilution), β-actin (Sigma Aldrich, at 1:10,000 dilution), p-IRF3 (Cell Signaling, at 1:1,000 dilution), p-p65 (Cell Signaling at 1:1,000 dilution), p65 (Cell Signaling at 1:1,000 dilution), IRF3 (Santa Cruz Biotechnology, at 1:1,000 dilution), Histone H3 (Abcam at 1:1,000 dilution) and MyD88 (Abcam, at 1:500 dilution).
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9

Investigating HDAC and Apoptosis Signaling

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The following antibodies were used: HDAC5, HDAC7, and MyD88 (Abcam, Cambridge, MA); active caspase-3, p-P70 S6K (T389), and P70 S6K antibodies (Cell Signaling, Danvers, MA); α-tubulin and FLAG antibodies (Sigma-Aldrich, St. Louis, MO). Polyclonal anti-HDAC4 antibody was described previously (Zhao et al., 2001 (link)). GSK3 inhibitor SB216763, iNOS inhibitor NAME, Griess reagent, and LPS were purchased from Sigma-Aldrich.
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10

Protein Expression Analysis of Brain Tissues

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The total protein was extracted from brain tissues, then homogenized in RIPA lysis buffer including protease inhibitor (Solarbio, China) and phosphatase inhibitor (Solarbio, China) for 30 min on ice. Protein of supernatant was collected after centrifugation for 15 min (13,600 ×g, 4°C). Total protein was detected using a bicinchoninic acid (BCA) kit (Thermo Scientific, USA). Brain lysates were electrophoresed on 10% SDS-PAGE, transferred to nitrocellulose membrane, then blocked with tris-buffered saline with Tween 20 (TBST) solution containing 3%BSA. Membranes were probed with primary antibodies for MyD88 (Abcam, USA), TRAF6 (Abcam, USA), NF-κB p65 (Abcam), Nrf2 (Bioss, China), HO-1 (Bioss, China), GAPDH (Abcam) and β-actin (Abcam) overnight at 4°C, and washed with TBST 3 times for 10 min. Membranes were treated with HRP-conjugated anti-rabbit antibody (Bioss, China) the next day. Protein bands were analyzed using enhanced chemiluminescence and calculated using ImageJ software.
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