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Magnetom trio tim syngo

Manufactured by Siemens
Sourced in Germany

The MAGNETOM Trio TIM Syngo is a magnetic resonance imaging (MRI) system developed by Siemens. It is designed to provide high-quality medical imaging capabilities for clinical applications.

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11 protocols using magnetom trio tim syngo

1

Multimodal Brain Imaging Protocol

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MR images were acquired using a 3T Siemens MAGNETOM Trio TIM Syngo MRI scanner, with a 12-channel head coil. Anatomical images were obtained using a T1-weighted (T1w) Magnetization Prepared Rapid Gradient Echo sequence: 192 slices; Repetition Time (TR) = 2,400 s; Echo Time (TE) = 2.43 ms; slice thickness = 1 mm; flip angle = 8°; matrix = 256 × 256. Resting-sate functional images were acquired using a T2*-weighted echo-planar imaging sequence: 42 slices; TR = 2,600 ms; TE = 30 ms; flip angle = 90°; slice thickness = 3.4 mm; FoV = 218 mm, matrix = 64 × 64. Throughout the 5:01 min resting-state functional MRI scan, participants were instructed to lie still with their eyes open.
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2

Functional and Structural Brain Imaging

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The MR imaging was performed using a 3T scanner (Siemens Magnetom TrioTim syngo) at the Brain Imaging Center of Institute for Brain Research and Rehabilitation, South China Normal University. Functional images were collected with an echo-planar imaging sequence using the following parameters: TR = 2,000 ms, TE = 30 ms, matrix size = 64 × 64, field of view (FOV) = 224 mm × 224 mm, flip angle = 90°, slice thickness = 3.5 mm, 32 interleaved slices, and 240 volumes acquired in 8 min. The participants were instructed to lie down, keep their eyes open, not think about anything specific, and remain still.
T1-weighted 3D images were collected with the following parameters: TR = 1,900 ms, TE = 2.52 ms, matrix size = 256 × 256, FOV = 256 mm × 256 mm, flip angle = 9°, slice thickness = 1.00 mm, and 176 slices covering the whole brain.
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3

Structural MRI Acquisition Protocols

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Downloaded datasets from ABIDE and COBRE included a high resolution T1-weighted structural MRI scan for each of the subjects. MR scanner and structural acquisition parameters varied across sites.
The ABIDE-BNI scans were acquired on a 3T Philips Achieva MRI (Philips Medical Systems, Best, The Netherlands) with a 15-channel receive coil. T1 acquisition sequence: MPRAGE, TR/TE/TI/flip angle = shortest/shortest/900 ms/9°, number of excitations (NEX) = 1 number of slices = 170, Slice voxel size = 1 × 1 × 1 mm3, field of view (FOV) = 270 × 252 mm.
The COBRE scans were acquired on a 3T Siemens MAGNETOM TrioTim syngo (Siemens, Erlangen, Germany) with a 12-channel receive coil. T1-weighted images were acquired with a 5-echo multi-echo MPRAGE sequence [TE = 1.64, 3.5, 5.36, 7.22, 9.08 ms, TR/TI = 2530 ms/1200 ms/7°, NEX = 1, slice thickness = 1 mm, voxel size = 1 × 1 × 1 mm3, FOV = 256 × 256 mm.
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4

3T MRI Structural Brain Imaging

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Anatomical MRI was performed at the Unité de Neuroimagerie Fonctionelle (UNF) du Center de Recherche de l'Institut Universitaire de Gériatrie de Montréal (CRIUGM). Brain imaging was done with a 3.0T Siemens MAGNETOM Trio TIM Syngo magnetic resonance imaging (MRI) scanner (Siemens, Erlangen, Germany), with a 12-channel head coil. For each participant, we obtained a 3D, T1-weighted Magnetization Prepared Rapid Gradient Echo [MPRAGE] sequence (TR/TE/TI = 2300/2.98/900 ms) (voxel size = 1 × 1 × 1 mm3; sagittal acquisition; 176 slices; 256 × 256 mm grid). The raw images underwent automated correction for intensity non-uniformity and normalization for signal intensity (Sled et al., 1998 (link)).
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5

Multimodal MRI Acquisition in Children

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Children underwent 3 Tesla MRI (Siemens Magnetom TrioTim syngo) at 11 years of age at the Royal Children's Hospital, Melbourne. T1 images were acquired: repetition time (TR)/echo time (TE) 1950/2.24 msec, 0.9 mm isotropic voxels, field of view (FOV) 230 × 221 mm and flip angle 9 degrees. Diffusion images were acquired via two sequences: (1). TR/TE 7500/89 msec, FOV 240 × 240 mm, 2.5 mm isotropic voxels, b‐value 1000 sec/mm2, 25 diffusion‐weighted gradient directions, five = 0 sec/mm2 volumes; (2). TR/TE 8000/112 msec, FOV 240 × 240 mm, 2.5 mm isotropic voxels, b‐value = 3000 sec/mm2, 45 diffusion‐weighted gradient directions, six = 0 sec/mm2 volumes. All children had both of the diffusion sequences, but one child in the caffeine group did not complete the second (= 3000 sec/mm2) sequence.
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6

Functional MRI Preprocessing Pipeline

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Echo-planar images (EPIs) were acquired on a Magnetom TrioTim Syngo (Siemens, Munich, Germany). The entire run consisted of 600 EPIs (37 ascending slices; 20% gap; 3*3*3 mm voxels; TR = 2000 ms; TE = 30 ms; FA = 70°; FoV = 192; GRAPPA = 2). Additionally, a high-resolution T1-weighted MPRAGE image (176 ascending slices; 50% gap; 1*1*1 mm voxels; TR = 1900 ms; TE = 2.52 ms; FA = 9°; FoV = 256; GRAPPA = 2) was acquired to improve spatial normalization. All fMRI data were preprocessed and analyzed using SPM 12 (Ashburner et al., 2014 ) in Matlab R2019b (The Mathworks, Natick, Massachusetts, USA). EPIs were corrected for acquisition delay (slice timing), with the middle slice as reference, and for head motion (realignment). The MPRAGE image was coregistered to the mean EPI obtained from realignment and segmented using the unified segmentation algorithm implemented in SPM. EPIs were normalized to a common stereotactic reference frame (MNI) space using the transformation parameters obtained from segmentation, and smoothed using an 8 mm full-width-at-half-maximum isotropic Gaussian kernel.
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7

Functional and Anatomical Brain Imaging Protocol

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Functional and anatomical images were collected using a 3T Siemens Magnetom Trio Timsyngo MR system, with a 12-channel head coil in the State Key Laboratory of Cognitive Neuroscience and Learning of Beijing Normal University. Functional images were collected using a gradient-recalled-echo echo-planar imaging (EPI) sequence sensitive to the BOLD signal. Forty-one axial slices were collected with the following parameters: TR = 2500 ms, TE = 30 ms, flip angle = 90°, FOV = 20 cm, matrix = 64 × 64, 3 mm thickness, yielding a voxel size of 3.125 mm × 3.125 mm × 3 mm, interleaved slices with no gap. The LD task was accomplished in two runs of 332 volumes (13 m, 50 s) including four TRs of rest at the beginning and end of each run.
Following the acquisition of functional data, high resolution T1-weighted anatomical reference images were obtained using a 3D magnetization prepared rapid acquisition gradient echo (MPRAGE) sequence, TR = 2530 ms, TE = 3.45 ms, flip angle = 7°, FoV = 25.6 cm, matrix = 256 × 256 with 1 mm thick sagittal slices.
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8

Ex vivo MRI of CAA Brain Hemispheres

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Intact human brain hemispheres from 19 patients with definite CAA20 (link) and 5 non-CAA control cases were included from an ongoing post-mortem MRI study at MGH. Details on the inclusion process, scanning procedures and tissue block sampling have been described previously.8 (link),30 (link) In short, the hemispheres were fixed in 10% formalin for several weeks after autopsy. Prior to ex vivo 3T MRI, the hemispheres were placed in a plastic bag filled with periodate-lysine-paraformaldehyde and vacuum sealed. The samples were scanned overnight on a 3T MR system (Siemens, Magnetom trioTim syngo) using a 32-channel head coil. The protocol included a T2-weighted turbo-spin echo sequence (TR, 1800 ms; TE, 61 ms; voxel size, 500 μm3 isotropic) and a gradient-echo fast low-angle shot (FLASH) sequence (TR, 20 ms; voxel size, 500 μm3 isotropic). Presumed ischaemic and haemorrhagic CC lesions were identified by the same raters (W.M.F. and S.J.v.V.) who were blinded to CAA severity or other histopathological findings. Inter-rater reliability for the presence of CC lesions was substantial [κ (95% CI) = 0.75 (0.48–1)].
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9

Structural MRI of Children's Brains

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Anatomical magnetic resonance imaging (MRI) was performed at the Unité de Neuroimagerie Fonctionnelle (UNF) du Centre de Recherche de l’Institut Universitaire de Gériatrie de Montréal (CRIUGM) on a 3.0T Siemens MAGNETOM Trio TIM Syngo (Siemens, Erlangen, Germany), with a 12-channel head coil. A total of 65 children underwent a three-dimensional, high-resolution, whole brain, structural T1-weighted magnetization-prepared gradient-echo image (MP-RAGE) sequence; TR = 2,300 ms, TE = 2.98 ms, TI = 900 ms; 256 mm field of view, 1 mm slice thickness, 176 slices, sagittal acquisition, time = 9 min. For this study, only 53 children’s data were analyzed, as rest of 12 children had no genetic data.
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10

3T MRI Brain Imaging Protocol

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MRI data were acquired using a 3.0-T whole-body scanner (Magnetom TrioTim Syngo; Siemens Medical Solutions) equipped for echo planar imaging (Siemens Medical Systems, Iselin, NJ, USA) with a 32-channel head coil. Head movements were restricted using foam cushions. Following automated scout and shimming procedures, two high-resolution 3D MPRAGE sequences [repetition time (TR) = 2.53 ms, echo time (TE) = 3.47 ms, flip angle = 90º, voxel size = 1.3 × 1.0 × 1.3 mm] were collected for positioning of subsequent scans. Functional blood oxygenation level dependent signal MRI images were acquired using T2*-weighted fast gradient EPI sequence (31 coronal slices, interleaved, aligned at a 0.68 degree rotation perpendicular to the plane intersecting the anterior and posterior commissures, 3 mm thickness, skip 1 mm, TE = 30 ms, TR = 2 s, 90° flip angle, FOV 200 mm, voxel size 2 × 2 × 2mm).
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