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60 protocols using glyphosate

1

Quantitative Analysis of Agrochemicals

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The following reagents were used: (a) glyphosate (AccuStandard) as chromatographic standard, (b) glyphosate 95% provided by Red Surcos, (c) 2,4-dichlorophenoxyacetic acid (Sigma-Aldrich) as chromatographic standard, (d) hydrogen peroxide (Ciccarelli p.a., >99%), (e) catalase from bovine liver, >2000 units mg -1 (Fluka, 1 unit decomposes 1 mmol H 2 O 2 per minute at pH 7.0 and 25 °C), (f) dicamba (Pestanal) as chromatographic standard and (g) dicamba 98% provided by Red Surcos. Distilled water was used in all experiments.
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2

Assessing Glyphosate Tolerance in Strains

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In order to assess the maximum concentration of glyphosate that each strain can tolerate, the MIC method proposed by Cockerill et al. (2012) was adopted (2012). Petri dishes with solid MSB-Gly medium containing increasing concentrations of glyphosate (>99%, Sigma-Aldrich, Buenos Aires, Argentina) were prepared (0, 100, 500, 1000, 2000, 3000; 5000, 7500, and 10000 mg glyphosate kg–1). To prepare the inoculum, strains were cultured in MSB-Gly medium until they reached cell densities between 1 × 108 CFU ml–1 to 2 × 108 CFU ml–1. Then, 2 μl of cell suspensions with an estimated total number of 1.104 CFU were dropped on the agar surface. Five replicates of each strain were performed for each concentration. Plates were incubated at 25°C for 6 days and the MIC end points were determined as the concentration where the growth of the colonies was inhibited with more than 50% compared to the control (MSB without glyphosate). Escherichia coli DH5α (Taylor et al., 1993 (link)) (an EPSPS Class I carrier strain) was selected as a negative control. E. coli EPSPS is naturally sensitive, and no tolerance and/or degradation mechanisms have been reported.
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3

Isolation of Glyphosate-Resistant Bacteria

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For the inoculum, 5 g of each soil sample was suspended in 10 mL sterile water and after centrifugation, 1 mL of each sample
was inoculated into 250 mL M9 minimal medium Erlenmeyer flasks and incubated at 30 °C. After two days, 200 µL of the content
of each flask was spread onto M9 plates containing 60 mM glyphosate (glyphosate was purchased from Sigma-Aldrich).
At the end, after three days of incubation at 30 °C, each colony was transferred to a new M9 medium plate containing 200 mM glyphosate.
Among them, one colony grew well in this concentration of glyphosate that was selected for further verification.
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4

Synthesis and Characterization of Polymeric Materials

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Acetonitrile (#271004,
99.8%, MW = 41.08 g/mol), acrylamide (#A9909, 99%, MW = 71.08 g/mol),
azobis(2-methylpropionitrile) (#441090, 98%, MW = 164.31 g/mol), glyphosate
(#45521, 98%, MW = 169.07 g/mol), N,N′-methylenebis(acrylamide) (#146072, 99%, MW = 154.17 g/mol),
toluene (#244511, 99.8%, MW = 92.14 g/mol), and trimethoxy(7-octen-1-yl)silane
(#452815, 80%, MW = 232.39 g/mol) were purchased from Merck (Poznan,
Poland). Ethanol (#BA6480111, 99.8%, MW = 46.08 g/mol) and isopropanol
(#BA1500111, 99.7%, MW = 60.11 g/mol) were from POCh (Warsaw, Poland).
Hydrogen peroxide (#118851934, analytical grade, MW = 34.01 g/mol)
and sulfuric acid (#115750013, 98%, MW = 98.08 g/mol) were procured
from Chempur (Piekary Slaskie, Poland). Acetone (#50-8123, 99.8%,
MW = 58.08 g/mol) was obtained from Linegal Chemicals (Warsaw, Poland).
Fused silica slides were provided by TedPella (GE124, #26009; Redding,
CA), while commercial fused silica microcapillaries were purchased
from Postnova (#FSS-Z-200280; Landsberg, Germany).
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5

Pesticide Extraction and Quantification

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Four pesticides, viz. glyphosate, 2,4-D, chlorothalonil and dimethoate of ≥ 98% purity, were obtained from Merck. Acetonitrile and methanol (LC–MS grade), and certified standard chemicals (MS grade, ≥ 99.9% purity) like CaCl2, KCl, formic acid, acetic acid, phosphoric acid, ammonium acetate and ammonium formate were also purchased from Merck. The commercial formulations of the selected pesticides, glyphosate (100 g L‒1 isopropylamine salt) and 2,4-D amine 625 (625 g L‒1 dimethylamine and diethanolamine salts), chlortan 720 (720 g L‒1 chlorothalonil), dimethoate (400 g L‒1 dimethoate), were obtained from CRT Raymond’s Warehouse (suppliers of pesticide products in Australia). Aliquots of 1000, 160, 133.33 and 250 μL of the commercial formulations were diluted to 1.0 L with Milli-Q water to obtain 100 mg L‒1 stock solution of glyphosate and 2,4-D, chlorothalonil and dimethoate, respectively. Then, 1.0 mL of each pesticide solution (100 mg L‒1) was applied to 20 g soil to provide a final concentration of 5 mg L‒1.
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6

Enzymatic Bioassay for Pesticide Detection

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Glyphosate (PESTANAL®, analytical standard; CAS N. 1071-83-6; MW: 169.07), Imidacloprid (PESTANAL®, analytical standard; CAS N. 138261-41-3; MW: 255.66), Imazalil (PESTANAL®, analytical standard; CAS N. 35554-44-0; MW: 297.18), lamba-cyhalothrin (PESTANAL®, analytical standard; CAS N. 91465-08-6: MW: 449.8), acetylcholinesterase from Electrophorus electricus (CAS N. 9000-81-1; E.C. 3.1.1.7), butyrylcholinesterase from equine serum (CAS N. 9001-08-5; E.C. 3.1.1.8), tyrosinase from mushroom (CAS N. 902-10-2; E.C. 1.14.18.1), acetylthiocholine iodide (CAS N. 1866-15-5; MW: 289.18), butyrylthiocholine iodide (CAS N. 1866-16-6; MW: 317.23), 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB; CAS N. 69-78-3; MW: 396.35), 3,4-dihydroxy-L-phenylalanine (CAS N. 59-92-7; MW: 197.19) and kojic acid (CAS N. 501-30-4; MW: 142.11) were purchased from Merck (Darmstadt, Germany). All other reagents and salts were of analytical grade and were also obtained from Merck (Darmstadt, Germany).
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7

Analytical Determination of Glyphosate

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Glyphosate, aminomethylphosphonic acid, and malonic acid were purchased from Merck (Darmstadt, Germany). Ammonia solution (30%) and methanol were purchased from Carlo Erba (Milan, Italy). Standard solutions of phosphorous (10,000 mg L−1) were obtained from Inorganic Ventures (Lakewood, NJ, USA).
HPLC-grade water was obtained from an ultrapure water purification system (18.2 MΩ cm, ELGA PURELAB flex, Veolia Water Solutions and Technologies, Ontario, Canada).
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8

Cytotoxicity of Pesticide Standards

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Glyphosate (PESTANAL®, analytical standard), Imidacloprid (PESTANAL®, analytical standard) and Imazalil (PESTANAL®, analytical standard) were purchased from Merck (Darmstadt, Germany). Versene, trypsin-EDTA, Dulbecco’s Modified Eagle Medium (DMEM), penicillin, streptomycin, sodium pyruvate, L-glutamine and foetal bovine serum (FBS) were obtained from Gibco (Alfagene, Invitrogen, Lisbon, Portugal). Alamar Blue® was purchased from Invitrogen, Life-Technologies (Porto, Portugal).
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9

Synthesis of Metal Nanoparticles

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Gold(III)chloride trihydrate, trisodium citrate dihydrate, hydroxylamine hydrochloride, glyphosate (N-(phosphonomethyl)glycine) powder, sodium nitrate, and cysteamine hydrochloride (≥98%) were provided by Merck. Silver nitrate was provided by Kemika (Zagreb, Croatia). All chemicals were of analytical grade and were used without further processing. High purity water with a resistivity of 18 MΩ cm−1 was used for all experiments.
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10

Analytical Standards for Environmental Analysis

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LC-MS grade methanol and water were obtained from VWR, Darmstadt, Germany. Quercetin dehydrate (≥95%, high performance liquid chromatography (HPLC)) was purchased from Enzo Life Sciences GmbH, Lörrach, Germany. Diclofenac (>99%) was obtained from Cayman Chemical Company, Ann Arbor, Michigan, MI, USA. Glyphosate (100 quality level, HPLC), gabapentin (200 quality level, HPLC), monuron (100 quality level, HPLC), chloridazon (100 quality level, HPLC), carbetamide (100 quality level, HPLC), metobromuron (100 quality level, HPLC), sotalol (≥98%), quinoxyfen (100 quality level, HPLC), metconazol (100 quality level, HPLC) and fenofibrate (≥99%) were obtained from Sigma, Darmstadt, Germany. Metformin (300 quality level, HPLC) was obtained from Fluka, Buchs, Switzerland. Furthermore, chlorbromuron (99.24%) and diazinon (99.53%) were obtained from Dr. Ehrenstorfer, Augsburg, Germany. Carbamazepine, 2,3-dihydro-2,3-dihydroxycarbamazepine, 10,11-dihydro-10,11-dihydroxy-carbamazepine, 10,11-dihydro-10-hydroxy-carbamazepine, 9-acridine carboxaldehyde and carbamazepine-10,11-epoxide were kindly provided by the German Research Center for Environmental Health, Comparative Microbiome Analysis (COMI), Helmholtz Centrum of Munich, Munich, Germany.
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