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13 protocols using cyp7a1

1

Metformin and Insulin Modulate Bile Metabolism

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The TFA was provided by Chengdu Pusi Biotechnology, Co., Ltd. (Chengdu, Sichuan, China). Metformin was purchased from GBCBIO technology (Guangzhou, Guangdong, China). Insulin was provided by Yuanye Bio-Technology Co., Ltd. (Shanghai, China). Lipopolysaccharide (LPS) was purchased from Sigma (St. Louis, MO, USA). ELISA kits for measuring total bile acid (TBA), total cholesterol (TCHO), total triglyceride (TG), glutamic oxalacetic transaminase (AST), glutamic-pyruvic transaminase (ALT), high-density lipoprotein (HDL-C), and low-density lipoprotein (HDL-C) were purchased from Jiancheng (Nanjing, Jiangsu, China). Primary antibodies for apical sodium-dependent bile acid transporter (ASBT) were purchased from PL Laboratories (Richmond, Canada). CYP7A1 and FXR were purchased from Santa Cruz (Dallas, TX, USA). TGR5 was provided by Abcam (Cambridge, MA, USA). GLUT2 was derived from Bioss (Beijing, China). Other reagents are from commercial sources.
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2

Protein Expression Analysis in Cultured Cells

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Total protein was extracted from cultured cells by using lysis buffer supplemented with protease and phosphatase inhibitors. The protein concentration was measured by protein assay (Bio-Rad Laboratories, CA), and all 30 μg of samples were analyzed. Cellular proteins were separated by SDS-PAGE and then were transferred onto PVDF membranes. The following antibodies used in this study were purchased from Cell Signaling (Beverly, MA, USA): phospho- and total- MEK, ERK, AKT, JNK, p38, caspase 9, caspase 3, and PARP; and Santa Cruz Biotechnology (Santa Cruz, CA, USA): SR-B1, NPC1, Cyp7a1, HMGCR, SREBP2, and FAs. The immunoblotting signals were normalized to total protein or the signal, resulting from blotting with an α-tubulin antibody (Sigma-Aldrich, St Louis, MO, USA). The bands were visualized using an ECL detection reagent (Millipore Corporation, Billerica, MA, USA).
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3

Immunohistochemical Analysis of ACC1, SREBP-1, and CYP7A1

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Immunohistochemical staining was performed on paraffin-embedded sections (4 μm) using a microwave-based antigen retrieval technique with a ChemMate Envision kit (Dako, Denmark). The antibodies used in this study included primary antibodies against ACC1 (Millipore, USA), SREBP-1 and CYP7A1 (Santa Cruz, CA, USA). After being immunostained with secondary antibodies, the sections were developed with diaminobenzidine to produce a brown product and were counterstained with hematoxylin. The stained tissues were examined by light microscopy (Nikon E600, Japan).
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4

Investigating Protein Interactions Using Co-IP and Western Blot

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Co-immunoprecipitation (Co-IP) and Western blot analyses were performed as described previously [40 (link)]. Cell lysates were prepared from hepatocytes or liver tissues of experimental animals and Western blotting was performed using the indicated antibodies. The following primary antibodies were used for the immunoblotting assay: β-actin (AbFrontier), anti-ERRγ (Perseus Proteomics), anti-HA (Roche Applied Science), anti-FLAG M2 (Sigma Chemical Co.) and CYP7A1 (Santa Cruz Biotechnology).
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5

RNA Isolation and Gene Expression Analysis

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Total RNA was isolated from snap frozen liver tissue using Qiazol and the RNAeasy isolation kit (Qiagen, Venlo, The Netherlands). RNA was reverse transcribed and cDNA was quantified in real time as reported previously (10 (link)) with commercial TaqMan Assays (Applied Biosystems) (Sup. Table 3). For the relative expression of genes, healthy-fed control animals of the respective day were set as 1. Immunoblots with CYP7A1 (Santa Cruz Biotechnologies, Dallas, Tex) and CYP27A1 (Thermo Fisher, Aalst, Belgium) antibodies were performed as described in the online supplement, Supplemental Digital Content 1.
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6

Comprehensive Profiling of Ginseng Saponins

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CP was purchased from Jiangsu Hengrui Medicine Co., Ltd. (Lianyungang, China). The ginseng sample (JSPACM-03-1) was collected from Jilin province and authenticated by Prof. Song-Lin Li via morphological and histological methods according to ginseng monograph in Chinese Pharmacopoeia (Version 2010). The voucher specimen was deposited in Department of Pharmaceutical Analysis and Metabolomics, Jiangsu Province Academy of Traditional Chinese Medicine. Reference compounds, including ginsenoside Re, Rg1, Rf, Ro, Rb1, Rc, Rb2, Rb3, Rd, 20(S)-Rg2, 20(S)-Rh2, 20(R)-Rg2 and 20(S)-Rg3, were purchased from Sichuan Victory Co. Ltd. (Chengdu, China). HPLC grade acetonitrile and methanol were purchased from Merck Company (Darmstadt, Germany). Antibodies for FXR, CYP7A1, CYP8B1, NTCP, OAT 2 and OAT 3, GST, BSEP, MRP 3, GCLM, GCLC, GS, NRF 1, NRF 2 and F4/80 were obtained from Santa Cruz Biotechnology (CA, USA). Brusatol was purchased from Beijing Zhili Biological Technology Co. Ltd. (Beijing, China). Ultra-pure water was prepared using Milli-Q SP system (Millipore, Bedford, MA, USA). All other reagents were of analytical grade and obtained from commercial sources.
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7

Liver Protein Extraction and Western Blot

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Proteins were extracted from liver tissues by using a solution of PMSF and RIPA buffer. A bicinchoninic acid protein quantification kit (Thermo Scientific, Waltham, Massachusetts, USA) was used to measure the protein concentration. Western blotting was performed as previously described. The primary antibodies included antibodies SREBP-1c (sc-366, Santa Cruz Biotechnology, Dallas, Texas, USA), CYP7A1 (sc-25536, Santa Cruz Biotechnology), HMGCR (sc-271595, Santa Cruz Biotechnology), LDLR (sc-18823, Santa Cruz Biotechnology), PPAR-α (sc-1985, Santa Cruz Biotechnology), PPAR-γ (sc-7196, Santa Cruz Biotechnology), and glyceraldehyde-3-phosphate dehydrogenase (sc-59540, Santa Cruz Biotechnology). Goat antirabbit IgG (HRP) (ZB2301, Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd., Beijing, China) was used as the secondary antibody. The membranes were scanned with an enhanced chemiluminescence system (Protein Simple, Santa Clara, CA, USA).
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8

Liver Protein Extraction and Western Blot

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The liver tissues were homogenized in the RAPI buffer (50 mM Tris, 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, sodium orthovanadate, sodium fluoride, EDTA, pH 7.4) with protease inhibitors, and centrifuged at 12,000 × g at 4°C for 20 min. The protein content was assessed using a BCA Protein Assay Kit (Beyotime, Shanghai, China). Antibodies to HNF-4α, JNK, and CYP7A1 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies to phosphotyrosine JNK and β-actin were from Abcam (Cambridge, UK). Equal amounts of protein were separated by electrophoresis in 12% SDS polyacrylamide gel and then electroblotted from the gels on a PVDF membrane (Millipore, Billerica, MA) as described by Towbin et al.(32 ) After blocking, the membrane was probed with the primary antibody at 4°C overnight, followed by incubation with horseradish peroxidase-conjugated secondary antibody for 2 h at room temperature. The immune complexes were visualized using enhanced chemiluminescence reagents (GE Healthcare) and quantified with Quantity One software (Bio-Rad, Richmond, CA).
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9

Liver Protein Expression Analysis

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Liver samples were homogenized in modified RIPA buffer containing 50 mM Tris, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.5% sodium deoxycholate, and 1% SDS supplemented with protease and phosphatase inhibitors (Roche, Indianapolis, IN). CYP7A1 (Catalog #: sc25536, 200 μg/ml, 1:500 dilution), CYP7B1 (Catalog #: sc26087, 200 μg/ml, 1:500 dilution), and β-actin (Catalog #: sc47778, 200 ug/ml, 1:1000 dilution) antibodies were purchased from Santa Cruz and KLF15 (Catalog #: ab2647, 0.5 mg/ml, 1:1000 dilution) antibody was from Abcam (Cambridge, MA) for immunoblot analyses. Immunoblot signals were quantified using ImageJ (ImageJ 1.48v, NIH).
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10

Liver Protein Extraction and Immunoblot Analysis

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Liver samples were homogenized in modified RIPA buffer containing 50 mM Tris, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.5% sodium deoxycholate and 1% SDS supplemented with protease and phosphatase inhibitors (Roche). CYP7A1 (Catalog #: sc25536, 200 μg ml−1, 1:500 dilution), CYP7B1 (Catalog #: sc26087, 200 μg ml−1, 1:500 dilution) and β-actin (Catalog #: sc47778, 200 μg ml−1, 1:1,000 dilution) antibodies were purchased from Santa Cruz and KLF15 (Catalog #: ab2647, 0.5 mg ml−1, 1:1,000 dilution) antibody was from Abcam (Cambridge, MA, USA) for immunoblot analyses. Immunoblot signals were quantified using ImageJ (ImageJ 1.48v, NIH). Full-length images of immunoblots are shown in Supplementary Figures 7–8.
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