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29 protocols using wga alexa488

1

Fluorescent Imaging of Extracellular PIA in S. aureus

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For fluorescent imaging of extracellular PIA, S. aureus cells were stained using WGA-Alexa 488 (Invitrogen, Carlsbad, CA, USA) according to a previously published method (28 (link)), with modifications. An overnight culture of S. aureus SH1000 was diluted 500-fold in BHIG broth containing 5% DMSO, with or without test compounds (20 μM JBD1, 20 μM ANG1, 20 μM JBD1 and 100 μM MK-7, or 100 μM MK-7), and 2-mL aliquots were cultured in 12-well flat-bottomed polystyrene plates (Corning) at 37°C for 24 h under static conditions. After removing the supernatants, the sedimented cells were resuspended in PBS, spotted on glass slides, and left to dry at room temperature. Then, the cells were stained with 5 μg/mL WGA-Alexa 488 (Invitrogen) in PBS for 20 min at 37°C, washed twice with PBS, and subsequently stained with DAPI (Wako, Osaka, Japan) for 5 min at room temperature. Stained cells were mounted with the Vectashield mounting medium (Vector Laboratories, Burlingame, CA, USA) and observed using a fluorescence microscope (ECLIPSE E600; Nikon, Tokyo, Japan).
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2

Visualizing Aeromonas Biofilm Extracellular Matrix

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Aeromonas strains were cultured in LB medium at 30°C for 24 h to form biofilm. After extraction of the ECMs, the presence of eDNAs, proteins and polysaccharides containing GlcNAc in the extracted ECMs were visualized using BOBO-3 (Thermo Fisher Scientific, MA, United States), FilmTracer SYPRO Ruby Biofilm Matrix Stain (Thermo Fisher Scientific, MA, United States) and wheat germ agglutinin (WGA)-Alexa488 (Thermo Fisher Scientific, MA, United States), respectively. BOBO-3, a cell-impermeable DNA stain reagent, was used at 250 nM to visualize eDNAs in the ECMs. FilmTracer SYPRO Ruby Biofilm Matrix Stain was treated with the sample for 60 min. After the treatment, the sample was gently washed three times with sterile water to visualize proteins in the ECMs. WGA-Alexa488 conjugate, a lectin that binds to GlcNAc, was employed at 10 μg/mL to visualize polysaccharides containing GlcNAc in the ECMs. We observed the stained samples using fluorescent microscope BX51-33-FL-2 (Olympus, Tokyo, Japan) (Figure 1) or confocal laser scanning microscope FV-300, Olympus, Tokyo, Japan) (Figures 4, 5). Each fluorescence intensity was quantified using “Image J” image analysis software (Collins, 2007 (link); Schneider et al., 2012 (link)).
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Confocal Microscopy Imaging of Cell Uptake

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For confocal microscopy, 50,000–100,000 LNCaP cells were seeded on PLL-coated slides, while A549, PC3, and MCF7 cells were seeded on uncoated slides in full medium 1 day prior to treatment. Samples were added to the medium of the cells (medium, Cy5-labeled HJ or HJ-aptamer in 200 nM) and incubated at 37°C for 45 min for A9g and 2 h for GL21.T. The medium was removed, and the cells were washed three times with PBS. The cells were stained with 200 μL of 2.5 μg/mL wheat germ agglutinin (WGA)-Alexa 488 (Thermo Scientific) for 15 min at 37°C. The cells were washed three times with PBS and fixed by adding 200 μL of 4% paraformaldehyde (PFA) and incubated at 37°C for 15 min. Samples were washed with PBS, dried, and stained with one drop of DAPI ProLong Gold (Invitrogen) to each position on the slide. After mounting of the cover slide, the sample was incubated at 4°C O/N. Cells were imaged on a confocal laser scanning microscope (Zeiss LSM 700) with a ×63 oil objective. All images within one experiment were acquired with identical laser and filter settings and subsequently adjusted for brightness and contrast equally in Fiji software for improved visualization.
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4

Cardiac Tissue Immunofluorescence Imaging

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Briefly, the cardiomyocytes or deparaffinized heart sections (5 µm intervals) were subsequently fixed with 4% paraformaldehyde for 20 min and permeabilized with 0.5% (v/v) Triton X-100 in PBS for 20 min at 37 °C. After wash, the samples were blocked in 2% (w/v) BSA in PBS for 2 h and incubated with primary antibody at 4 °C overnight. In our studies, the following primary antibodies were used: troponin T-FITC (Abcam, ab196384, the cardiomyocytes marker) and WGA-Alexa488 (Thermo Fisher Scientific, W11261). After incubation and washing with PBS, the nuclei were stained with DAPI for 15 min. Images were captured with a confocal laser scanning microscope (Leica TCS SP8, Wetzlar, Germany). The total tissue positive areas were measured with ImageJ software (version 1.8.0). Data were expressed as a percentage of positive staining area to the total area.
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5

Histological Analysis of Cardiac Remodeling

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After the completion of the experiments, the animals were euthanized. The hearts were harvested and arrested in diastole with 0.5% KCl (w/v) in PBS. The heart weights (HW) were determined and normalized to the body weight (BW). Then, part of each heart was immersed in 4% paraformaldehyde perfusion at 4 °C overnight. On the next day, the tissue samples were transferred to 70–100% ethanol for dehydration before embedding in paraffin. Heart sections (5 µm intervals) were deparaffinized and stained with hematoxylin and eosin (H&E), picrosirius red staining (Sigma-Aldrich) according to routine procedures. Images were acquired using Nikon Eclipse Ni light microscopy.
To determine the myocyte cross-sectional area, heart sections were incubated with wheat germ agglutinin-Alexa488 (WGA-Alexa488, Thermo Fisher Scientific, W11261) for 1 h to visualize the membranes and with 4,6 diamidino-2-phenylindole (DAPI) for 20 min to observe the nuclei. At least 100 randomly selected myocytes were measured from five animals/groups, and the average values were used for analysis. All measurements were made using ImagePro Plus software version 7.0 (Media Cybernetics, Rockville, MD). All morphometric analyses were performed in a blinded fashion. Sections were measured using a Leica TCS SP8 Confocal microscope (Leica, Wetzlar, Germany). All histopathologic data were confirmed by a blinded pathologist.
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Cardiac Tissue Morphometric Analysis

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Heart tissue was fixed in 4% paraformaldehyde solution for 24 h and embedded in paraffin after dehydration using 70%–100% ethanol. The heart paraffin blocks were cut transversely into 5 μm sections. After deparaffinization, the heart sections subjected to Masson's trichrome staining were performed according to instruction book. To determined myocyte cross‐sectional area, heart sections were stained with Alexa Fluor 488 conjugated wheat germ agglutinin (WGA) (WGA‐Alexa488, Thermo Fisher Scientific, W11261) for 1 h to demarcate the cell boundaries. After staining, images were acquired with a confocal laser scanning microscope (Leica TCS SP8, Wetzlar, Germany). The myocyte cross‐sectional area and LV collagen volume were quantitatively measured by ImagePro Plus software version 7.0 (Media Cybernetics, Rockville, MD).
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7

Visualizing Intestinal Mucus Using WGA

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Intestinal mucus was visualized on-chip using wheat germ agglutinin (WGA)-Alexa 488 (ThermoFisher).5 (link) Briefly, 25 μg/mL of WGA in Hanks’ Balanced Salt Solution (HBSS, Gibco) was flowed at 200 μL/h through the apical channel for 30 min and then washed with continuous flow of HBSS at the same flow rate for 30 min. The entire channel was visualized with a fluorescence microscope (Excitation/Emission = 488/523 nm, Zeiss Axio Observer Z1). The mucus layer was set as the distance between the apical cell surface and the upper limit of the WGA-labeled material; the thickness of the mucus layer was measured by ImageJ. For MUC2 visualization, immunofluorescence microscopic imaging was carried out on 150–200 μm chip sections using antibodies against MUC2 (Santa Cruz, sc-15334) and a secondary antibody (ThermoFisher, A31573).12 (link),13
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8

Myocyte Morphometry in Heart Tissue

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5 μm paraffin tissue sections were de-paraffinized, rehydrated and incubated with Alexa-488 conjugated wheat germ agglutinin (WGA-Alexa 488, 1:500, Thermofisher cat W11261) and DAPI (4′, 6-diamidino-2-phenylindole, Sigma-Aldrich, cat 10236276001, 1:500) diluted in TBS-T at room temperature for 1 h in a humidified chamber protected from light. After staining, slides were washed 3 × 5 min in TBS-T and were mounted with 10 μl of mounting medium (ProLong Gold Antifade, Invitrogen, Thermofisher P36935) according to manufacturer's instructions. Images of WGA-stained heart sections were acquired using 63 x objective of inverted confocal microscope (TCS SP5 system, Leica) and transverse-cut myocytes with central nuclei were traced manually using NIH ImageJ software. As a minimum 200 myocytes were analyzed for each experimental animal.
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9

Cellular Uptake of Theranostic Nanoparticles

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Cellular uptake of TH-NPs was assayed in HaCaT cells seeded in an 8-well µ-slide (Ibidi®) following the same methodology as described before. Cells were incubated with or without R-TH-NP for 2 h at the indicated concentration, using FBS/phenol red free medium. Cell membranes were stained with wheat germ agglutinin (WGA) Alexa-488 (Molecular Probes) at 1 µg/mL for 15 min followed by fixation with paraformaldehyde 3% for 25 min. Cell nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma Aldrich, Spain) at 0.5 µg/mL for 15 min. Internalization of NPs in HaCaT cells was assessed by confocal microscopy (Leica TCS SPII), 63× oil immersion objective lens [43 (link)]. Images were processed using Fiji image software.
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10

Quantifying Colonic Mucin Granules

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The proximal and distal areas of the colon were dissected out and fixed in 10% PFA. OCT-embedded sections of 20 μm were stained overnight (O.N) at 4°C with mouse anti-E-Cadherin (Santa Cruz ref. sc-21791, 1:200) for immunohistochemistry characterization. After washing with PBS 0.01 M, the secondary antibody donkey anti-mouse Cy5 (Jackson Immunoresearch Laboratories, 1:400) was incubated for 2 h at room temperature. For lectin immunohistochemistry, WGA-Alexa488 1 μg/mL (Molecular Probes, Waltham, MA, United States) and DAPI 1 μg/mL (Molecular Probes, MA, United States) were incubated for 20 min before rinsed and mounted with fluorescence medium (Sigma). A tilt scan was done in an LSM780 (Zeiss) microscope, and the results of the total area (μm2) of mucin granules were quantified using the Otsu threshold (Otsu, 1979 (link)) of ImageJ since it is an option with excellent performance at different size of particles and in multi-intensity. Then, the results were normalized by the total mucosa layer (manually selected to compensate for the variation in the cross-sectional area of the colon).
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