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48 protocols using biochanin a

1

Antioxidant Compound Extraction and Assay

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Poly-ε-caprolactone (P.M 10.000), pluronic F-108 copolymer (poly(ethylene glycol)-block-poly(propylene glycol)-block-poly(ethylene glycol) (P.M. 14.000), and 2,2-diphenyl-1-picryhydrazyl (DPPH) reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA). Analytical standards: pinobanksin, isoliquiritigenin, formononetin and biochanin A were purcharsed from Sigma-Aldrich (St. Louis, MO, USA), and liquiritigenin was acquired from Extrasynthese (Lyon, France). HPLC-grade acetonitrile was purchased from J. T. Baker Mallinckrodt-Avantor (NJ, USA). Schneider for insect medium was purchased from Sigma-Aldrich (St. Louis, MO, USA). Biphasic medium Schneider’s/Novy-McNeal-Nicolle, supplemented with 10 % of foetal bovine serum (FBS), 50 U of penicillin/mL and 50 μg of streptomycin/mL was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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2

Analytical Standards for Chromatographic Analysis

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Ultra-pure water (18 mΩ) was obtained from a Milli-Q water purification system (Millipore Co., Ltd., Milford, MA, USA). High-performance liquid chromatography (HPLC)-grade methanol, acetic acid, and 56 analytical standards, including catechinic, scopolin, chlorogenic acid, epicatechinic, vanillic acid, caffeic acid, purerarin, syringic acid, daidzin, glycitin, scopoletin, eriocitrin, umbelliferone, p-coumaric acid, dihydroquercetin, sinapic acid, genistin, liquiritin, ferulic acid, salicylic acid, rutin, isoferulic acid, m-coumaric acid, naringin, hesperidin, resveratrol, xanthotoxol, silydianin, sinapyl alcohol, o-coumaric acid, liquiritigenin, kaempferol, 2’-hydroxygenistein, eriodictyol, daidzein, psoralen, glycitein, quercetin, didymin, bergaptol, naringenin, luteolin, cinnamic_acid, hesperetin, genistein, bergapten, diosmetin, isoliquiritigenin, coumestrol, sinensetin, formononetin, medicarpin, imperatorin, biochanin A, tangeretin, and rotenone (displayed in Table S2), were purchased from Sigma-Aldrich Co., Ltd. The stock solutions of these authentic standards were 10.0 mg of each standard dissolved in 10 mL methanol. Then, the stock solutions were diluted to various concentrations before analysis. All stock solutions were sealed with Parafilm® and stored in a −20 °C freezer.
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3

Quantitative Analysis of Isoflavones and Caffeine

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Formononetin, biochanin A, daidzein, genistein, caffeine, [trimethyl-13C3]-caffeine, tolbutamide, dextromethorphan, [methyl-d3]-dextromethorphan, alprazolam, [phenyl-d5]-alprazolam, and Helix pomatia β-glucuronidase and arylsulfatase were purchased from Sigma-Aldrich (St. Louis, MO). [butyl-d9]-4-Hydroxy-tolbutamide was purchased from Toronto Research Chemicals (Toronto, Canada). LC-MS grade acetonitrile and methanol were purchased from VWR (Radnor, PA), and LC-MS grade formic acid was purchased from Thermo Scientific (Rockford, IL). Water was prepared using an Elga Purelab Ultra (Siemens Water Technologies, Woodridge, IL) water purification system. Blank serum obtained from individual donors was purchased from BioIVT (Westbury, NY). The red clover dietary supplement was standardized chemically and biologically32 (link) and had been used in our previous clinical trials.33 (link),34 (link)
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4

Lipid and Sterol Composition Modulation of Membrane Permeability

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Synthetic 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-(1′-rac-glycerol) (POPG), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), cholesterol (CHOL), stigmasterol (STIGM), 7-dehydrocholesterol (7DCHOL), desmosterol (DESM), and camposterol (CAMPO) were purchased from Avanti Polar Lipids (Avanti Polar Lipids, Inc., Alabaster, AL, USA). Amphotericin B (AmB), nystatin (NyS), ergosterol (ERG), phloretin, biochanin A, genistein, quercetin, NaCl, KCl, NaOH, KOH, HEPES, EDTA, dimethylsulfoxide (DMSO), triton X-100, calcein, sephadex G-50, ethanol, methanol, chloroform, and hexadecane were obtained from Sigma-Aldrich Company Ltd. (Gillingham, UK). Figure 1 presents the chemical structures of the phospholipids, sterols, antibiotics, and polyphenols used in this study.
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5

Proteome Analysis of Kaempferol Treatment

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Cell lysates were obtained from 3T3-L1 or HepG2 cells. Cells were scraped and lysed with M-PER lysis buffer. After centrifugation for 15 min at 16,000×g, the supernatant was obtained, and protein content was quantified using Bradford reagent. Before drug treatment, the samples were diluted to achieve a protein concentration of 1 mg/mL. Samples were treated with the Kaem or DMSO for 2 h at 25 °C and then incubated with pronase (5, 10, and 20 µg/mL) or distilled water for 10 min at 25 °C. After the reaction, SDS was added to the sample and the samples were heated at 100 °C. A portion of each sample was used for LC–MS/MS analysis. Sample preparation and proteome analysis were conducted as indicated in the previous publication69 . For western blot analysis, VDAC1 or Na+K+ ATPase was used as an internal control. For the structure–activity-relationship (SAR) analysis, kaempferol (Sigma-Aldrich, 60010), Acacetin (Sigma-Aldrich, 00017), isosakuranetin (Sigma-Aldrich, PHL82569), Biochanin A (Sigma-Aldrich, D2016), (−)Epicatechin (Sigma-Aldrich, E4018), Genistein (Sigma-Aldrich, G6649) were used.
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6

Antioxidant Capacity Assay Protocol

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Genistein (product number; G6649), daidzein (product number; 16,587), biochanin A (product number; 92,142), 2,2-diphenyl-1-picrylhydrazyl (DPPH) (product number; D9132), 2,2-azinobis-(3-ethylbenzothiazoline)-6-sulfonic acid (ABTS) (product number; A3219), sulfanilamide (product number; S9251), naphthylethylenediamine dihydrochloride (NED) (product number; N9125), 3-morpholinosydnonimine hydrochloride (SIN-1) (product number; M5793), 2,4,6-tris(2-pyridyl)-s-triazine (TPTZ) (product number; 93,285), diethylene-triamine-pentaacetic acid (DTPA) (product number; D1133), Evans blue (product number; E2129), 2,2′-azobis (2-methylpropionamidine) dihydrochloride (AAPH) (product number; 440,914), trichloroacetic acid (TCA) (product number; T6399), 2-thiobarbituric acid (product number; T5500), low density from human plasma (product number; L8292), gallic acid (product number; G7384), ascorbic acid (product number; 1,043,003), potassium persulfate (product number; 216,224), ammonium acetate (product number; A1542), phosphate-buffered saline (PBS) (product number; P3619), and ferric chloride (product number; 451,649) were purchased from Sigma-Aldrich Chemical (St. Louis, MO, USA). Other reagents used were analytical grade.
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7

Phytoestrogen Quantification Protocol

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The reagents (acetic acid, sodium hydroxide, dimethyl sulfoxide) and solvents (methanol, acetone, ethylacetate, formic acid) were of analytical or LC/MS grade and were provided by Sigma-Aldrich (St. Louis, MO) or Biosolve BV (Valkenswaard, the Netherlands). The enzyme-a mixture of β-glucuronidase and sulfatase type HP-2 from H. pomatia-was obtained from Sigma-Aldrich (cat. no. G7017, lot no. SLBF3495; PCode 1001736103, purchased December 2014). Reference phytoestrogens (apigenin, genistein, daidzein, biochanin A, naringenin, formononetin, naringenin, and equol) were purchased from Sigma-Aldrich, and internal standards genistein-d4 (4-hydroxyphenyl-2,3,5,6-d4) and daidzein-d4 (4-hydroxyphenyl-2,3,5,6-d4) were from CDN Isotopes (EQ Laboratories GmbH, Augsburg, Germany). Deionized water was prepared using a Milli-Q water system (Millipore, Billerica, MA). The ultrafiltration column (Vivaspin 500; 10,000 molecular weight cut-off, MWCO, polycarbonate housing, polyethersulfone membrane) was purchased from Sartorius (Stedim Biotech GmbH, Goetting, Germany).
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8

Biochanin A Effects in Ovariectomized Rats

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Biochanin A (purity >98%) and β-estradiol (E2; purity >98%) were purchased from Sigma-Aldrich (Saint Louis, MO, United States).
Seven days after the surgery, rats were divided into six groups (n = 10 per group): sham, OVX, OVX + BCA (5 mg/kg), OVX + BCA (20 mg/kg), OVX + BCA (60 mg/kg), and OVX + E2 (0.35 mg/kg). BCA and estradiol were dissolved in 10% Tween 80 and 10% ethanol and administered by gavage every morning for 12 weeks. The doses of BCA and E2 and the treatment duration were determined based on previous studies (Aguiar et al., 2006 (link); Biradar et al., 2014 (link); Alauddin et al., 2018 (link)) and our preliminary experiment.
The body weights were monitored once a week for 4 weeks during the experiment.
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9

Evaluating Antidepressant-like Effects of Isoflavonoids in Mice

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One week after arrival at the University of Maryland School of Medicine's animal facilities, male and female mice were assigned to one of six experimental groups for drug treatment (n = 8 animals per group): (i) vehicle (10% dimethyl sulfoxide in sterile water as done in Xiao et al)27 (ii) Fluoxetine, (iii) arachidonyl serotonin (Arch‐5HT), (iv) biochanin‐A, (v) genistein, and (vi) 7‐hydroxyflavone. Fluoxetine (10 mg/kg; Sigma‐Aldrich, Cat No. #F132) was used as a standard antidepressant comparison for all groups as done in,28 while arch‐5HT (5 mg/kg; Sigma‐Aldrich, Cat No. A7357) was used as a standard FAAH inhibitor as done in.29, 30 Three different doses were selected based on published studies and were tested for each of the isoflavonoid compounds, and the lowest, maximally effective dose (indicated in bold) was selected and analyzed: biochanin‐A (20 mg/kg, 30 mg/kg, 40 mg/kg; Sigma‐Aldrich, Cat No. #D2016)31 genistein (10 mg/kg, 20 mg/kg, 30 mg/kg based on32; Sigma‐Aldrich, Cat No. #G6649), 7‐hydroxyflavone (10 mg/kg, 20 mg/kg, 30 mg/kg; Sigma‐Aldrich, Cat No. #H4530).33 The effect was measured after chronic administration of drugs, that is, 14 days of compounds/drug treatment followed by forced swim test. The minimum, maximally effective dose based on immobility time in forced swim test was selected.
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10

Activation of TAS2Rs and EDCs

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We employed 5 compounds, previously described as activators of TAS2Rs and EDCs in the literature. Genistein ≥98%, Daidzein ≥98%, Biochanin A and caffeine purchased from Sigma Aldrich (St. Louis, MO, USA) and 3′,4′,7-Trihydroxyisoflavone (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were dissolved in dimethyl sulfoxide (DMSO), ethanol, acetone and H2O, respectively, and diluted in the media containing Dulbecco’s Modified Eagle Medium (DMEM, 1X), containing fetal bovine serum (FBS) (10%), L-glutamine (1%), penicillin/streptomycin (1%), non-essential amino acids (1%) and Ultra serum (2%), not exceeding a final DMSO concentration of 0.1% (v/v) to avoid the toxic effect of the cells. For acetone and ethanol, the toxicity effect was measured separately.
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