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9 protocols using ripa lysis kit

1

Schisandrin A Modulates EGFR/PI3K/AKT Pathway

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The MDA-MB-231 cells were seeded in 6-well plates at a concentration of 6.0 × 104 cells/well and treated with SchA (0, 40 and 80 µM) for 24 h. RIPA lysis kit (Beyotime) and protein analysis kit (Takara, Kyoto, Japan) were used for cell lysis and total protein quantification analysis, respectively. The total protein was then separated on 10% SDS-PAGE gel electrophoresis and afterward transferred onto a nitrocellulose membrane by electroblotting (Millipore, Billerica, MA, USA). After blocking the membrane using 5% BSA for 2 h at room temperature, it was incubated overnight at 4°C with primary antibodies (p-EGFR, PIK3R1, Cleaved-caspase 3, AKT1, p-AKT1 and MMP9), in a dilution of 1:1000, (Cell Signaling Technology, Danvers, MA, USA). They were then incubated with secondary antibodies at room temperature for 1 h. Later, the membrane was washed in three tris buffered saline + Tween (TBST) cycles for 10 minutes. The proteins were then visualized by adding ECL (Thermo) and subsequently scanned and imaged using a FluorChem FC 3 system (ProteinSimple, USA). Finally, image J software was used to analyze the results.
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2

Western Blot Analysis of PPP6C

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Total protein sample was extracted using a RIPA lysis kit (Beyotime, Shanghai, China) and protein concentration was determined by BCA protein assay (Beyotime). Approximately 30 μg of protein sample was separated on 12% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred onto PVDF membranes (Millipore, Bedford, MA, USA). Block of membranes was performed with 5% nonfat milk in Tris-buffered saline containing 0.1% Tween-20 (TBST) for 2 h, the membranes were incubated with primary antibodies against PPP6C and GAPDH (Abcam, Cambridge, MA, USA) overnight at 4°C, followed by incubation with horseradish peroxidase-conjugated secondary antibody. Immunoreactive bands were visualized with an enhanced chemiluminescence kit (Millipore).
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3

Quantifying Autophagy Markers in EPCs

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We extracted protein from EPCs with the RIPA Lysis Kit (Beyotime). The total protein concentrations were measured using the BCA Protein Assay Kit (Beyotime). All of the samples, each containing 30 g protein, were boiled with loading buffer for 5 min and then loaded onto a 12% SDS-PAGE gel for 1.5 h and transferred onto PVDF membranes. The membranes were blocked with 5% non-fat milk in TBST for 1 h and then incubated with primary antibodies against four autophagy markers, anti-P62 (Sigma), anti-LC3 (Sigma), phospho-p70 S6 Kinase, Beclin-1 and anti-actin, overnight. Next, we removed the excess antibodies by washing with TBST and incubated the membranes with horseradish peroxidase-coupled secondary antibodies for 1 h. The immunoblots were visualized using ECL chemiluminescence (Beyotime) and quantified with Quantity One software (Bio-Rad, USA).
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4

Western Blot Analysis of Cell Signaling

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After being treated with 0.2 μM SeNPs@Am (in an equivalent anisomycin concentration level), 0.2 μM anisomycin, or 2 μM SeNPs, the HepG2 cells were washed and lysed by a RIPA Lysis Kit (Beyotime Institute of Biotechnology, China) containing phenylmethylsulfonyl fluoride (PMSF). The protein concentration of cytosolic extract was measured with a BCA Protein Assay Kit (Beyotime). An equal amount of the protein was separated by SDS-PAGE and then transferred onto nitrocellulose membranes (Amersham Biosciences, Pittsburgh, PA, USA). The membranes were blocked with 5 % non-fat milk at room temperature for 1 h and then washed three times with tris buffered saline (TBS) containing 0.05 % Tween 20 for 5 min each time. Thereafter, the membranes were probed at 4 °C overnight with primary antibodies, respectively, that included anti-ICBP90, anti-p16, anti-p21, anti-P-p21(Thr145), anti-p27, anti-P-p27 (Ser10), anti-P-CDK2 (Thr160), anti-p53, anti-P-p53(Ser20), anti-E2F1, anti-p73, anti-P-p73 (Tyr99), anti-Rb, anti-P-Rb (Ser807), and anti-β-actin. Then, the membranes continued to be incubated with relative second antibodies at room temperature for 1 h. The bands were visualized by enhanced chemiluminescence (Cell Signaling Technology, Inc. USA) according to the manufacturer’s instruction. The band density was checked by a FluorChem 8000 system (Alpha Innotech, Santa Clara, CA, USA).
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5

Western Blot Analysis Protocol

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After harvest, cells were treated by RIPA lysis kit combined with the protease inhibitor (Beyotime). Protein concentration of cell lysate was examined by BCA protein assay kit (Takara, Kyoto, Japan). The cell extracts were subsequently separated by SDS-polyacrylamide gel electrophoresis and then transferred to nitrocellulose membranes (Millipore, MA, United States). After blocking in 5% nonfat milk at room temperature for 2 h, membranes were incubated with primary antibodies overnight at 4°C, following with the treatment by horseradish peroxidase (HRP) coupled secondary antibody (#7076, Cell Signaling Technology) for 1 h at room temperature. Finally, membranes were treated by ECL reagent (Bio-Rad, CA, United States), signals were detected by FluorChem FC3 system (ProteinSimple, CA, United States) and then quantitatively analyzed by ImageJ software as we described before (Xu et al., 2019b (link)).
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6

Western Blot Analysis of METTL3 in HCASMCs

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HCASMCs were cultured in 6-well plates at a density of 5 × 10 5/well. Then, the RIPA Lysis Kit (Beyotime, China) mixed with phosphatase inhibitor (Beyotime, China), protease inhibitor (Beyotime, China), and phenylmethanesulfonyl fluoride (Beyotime, China) at 50× was applied to lyse the HCASMCs. The same amount of total protein was separated on SDS–PAGE gel by electrophoresis and then transferred onto a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). Membranes were blocked with blocking buffer (Beyotime, Shanghai, China) at room temperature, and then incubated overnight at 4 ℃ with primary antibodies toMETTL3 (1:1000, Proteintech, Wuhan, China). On the next day, the membranes were incubated in secondary antibodies for 1 h at room temperature. Proteins were imaged using the Tanon-5200 automatic gel imaging system (Tanon, Shanghai, China).
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7

Western Blot Analysis of Protein Expression

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Total protein was extracted using a RIPA Lysis Kit (Beyotime Biotechnology, Shanghai, China) by following the manufacturer’s protocol. Equal amounts of protein from each sample were electrophoretically separated using polyacrylamide gels, and then transferred to polyvinylidene fluoride membranes. The membranes were blocked at 23–25 °C for 1 h and then incubated at 4 °C overnight with primary antibodies against GLIPR1 (ab198215, Abcam), PLAU (ab28230 and ab24121, Abcam), EGFR (ab52894, Abcam), p-EGFR (11862S, Cell Signaling Technology, Boston, MA, USA), caspase-1 (22915-1-AP, Proteintech Group, Chicago, IL, USA), GSDMD (ab209845, Abcam; 97558, Cell Signaling Technology), IL-1β (AF5103, Affinity Biosciences, Cincinnati, OH, USA), and β-actin (4970, Cell Signaling Technology). Then, the membranes were washed three times and incubated with an appropriate horseradish peroxidase-conjugated secondary antibody at room temperature for 1 h. The proteins were visualized using enhanced electro-chemiluminescence reagents (Beyotime Biotechnology), and the bands were analyzed using an imaging system (Bio-Rad, Hercules, CA, USA).
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8

Western Blot Analysis of Signaling Pathways

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HCASMC cells were distributed in six-well plates at 5 × 105/dish, and the corresponding treatment was carried out for 24 h. Then, cell lysis was conducted with RIPA lysis kit (Beyotime) including phenylmethanesulfonyl fluoride. Quantification of total protein was detected with BCA protein assay kit (Beyotime). Total proteins (20 μg) were separated using 7.5–10% sodium dodecyl sulfate polyacrylamide gel electrophoresis. The resolved protein was subsequently transferred onto a nitrocellulose membrane. Membranes were blocked with quick blocking buffer (Beyotime) for 10 min at room temperature, and then incubated with primary antibodies at 4°C for 15 h, including p-STAT3, p-MAPK14, p-AKT (1:1,000; Cell Signaling Technology, Danvers, MA, USA), p-PI3K, PI3K, AKT, mTOR, and p-mTOR (1:1,000; Proteintech Group, Wuhan, China). Membranes were washed and then incubated in secondary antibodies (1:10,000) at room temperature for 1 h. Proteins were imaged by the Bio-Rad Chemi Doc XRS imaging system (Bio-Rad, USA).
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9

THP-1 cell response to Ellagic Acid treatment

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THP-1 cells were seeded in 6-well plates at 1.5 × 106 cells/mL. The cells were pretreated with or without LPS (1 μg/mL) for 1 h and then treated with ES (0, 12.5, 25, and 50 μg/mL) for 1 h. After incubation, the cells were harvested by centrifugation (1500 rpm, 5 min). Proteins were extracted by RIPA lysis Kit (Beyotime) containing phenylmethanesulfonyl fluoride (PMSF). Protein concentration in the supernatant was measured using BCA protein assay kit (Takara, Japan). Equal amounts of proteins were loaded on 10% SDS-polyacrylamide gel and transferred onto nitrocellulose membranes (Amersham Biosciences, UK). After blocking in Tris-buffered saline with 0.05% Tween 20 (TBST) containing 5% nonfat milk for 1.5 h, the membranes were incubated with primary antibodies (Cell Signaling Technology) at 4°C overnight. After washing, the membranes were incubated with HRP-conjugated IgG antibodies (Cell Signaling Technology) for 1 h. Membranes were developed using ECL Western blotting detection reagent (Bio-Rad). The band intensity was measured using the FluorChem 8000 system.
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