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16 protocols using anti sox2

1

Comprehensive Western Blot Protocol

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Western blot was performed as previously described 44 (link). The antibodies included anti-Oct4 (Bioss, Beijing, China, bs-0830R, 1:1000), anti-Nanog (Proteintech, Wuhan, China, 14295-1-AP, 1:1000), anti-CD44 (Proteintech, 15675-1-AP, 1:1000), anti-Sox2 (Proteintech, 11064-1-AP, 1:1000), anti-γ-H2AX (Abcam, Cambridge, UK, ab26350, 1:1000), anti-DLG2 (Affinity Biosciences, Suzhou, China, DF3995, 1:1000), anti-p-Yap1 (CST, Boston MA, USA, 4911S, 1:1000), anti-Yap1 (Proteintech, 13584-1-AP, 1:1000), anti-Bax (CST, B8429, 1:1000), anti-Bcl2 (Proteintech, 60178-1-Ig, 1:1000), anti-β-tubulin (Sigma-Aldrich, T5201, 1:1000), anti-Lamin B1 (Santa, Dallas TX, USA, sc-365962, 1:1000), anti-TEAD1 (ABclonal, Wuhan, China, A13366, 1:1000), anti-β-actin (Santa, sc-8432, 1:4000), CD63 (Proteintech, 25682-1-AP, 1:1000), and TSG101 (Proteintech, 28283-1-AP, 1:1000).
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2

Evaluating Cancer Stem Cell Properties

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The Cell-Light 5-ethynyl-2′-deoxyuridine (EdU) Apollo 488 in vitro kit (C10310-3) was purchased from RiboBio (Guangzhou, China). Oxaliplatin (OXA) was purchased from the Cancer Hospital of the Chinese Academy of Medical Sciences (Beijing, China). MTT was purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-GAPDH, anti-NANOG, anti-Snai1, anti-p38, and anti-p-p38 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-OCT4, anti-SOX2, anti-ZO1, anti-E-cadherin, anti-CD133, and anti-Ki67 antibodies were purchased from Proteintech Group, Inc. (Rosemont, IL, USA). Anti-S100A8 antibodies were purchased from Beyotime (Nantong, China).
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3

Immunofluorescence Staining of Cardiomyocytes

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Following 3 washes with PBS, cells (plated on a 1 × 1 cm glass slide) were fixed for 20 min with 4% paraformaldehyde and washed again with PBS. The samples were then incubated for 10 min at room temperature with 0.5% Triton X-100 in PBS and blocked with 5% bovine serum albumin (BSA) in PBS for 30 min at room temperature. Primary antibodies were diluted in 5% BSA in PBS and incubated overnight at 4 °C. Following 3 washes with 0.5% Triton X-100 in PBS, the samples were incubated with secondary antibodies diluted in 5% BSA for 60 min at 37 °C. The samples were then washed, incubated with Hoechst 33342 (Beyotime, China) in PBS for 30 min at 37 °C and washed again before imaging. Immunofluorescence staining was imaged using an A1R confocal microscope (Nikon, Japan). The following antibodies were used in this study: anti-SOX2, anti-Nanog (Proteintech, China), anti-cTnT, anti-CX43 (Abcam, China), and anti-α-actinin (Proteintech, China). The secondary antibodies were goat anti-rabbit Cy3, rabbit anti-mouse Cy3 (CWBIO, Beijing, China), and goat anti-rabbit 488 (ZSGB-Bio, Beijing, China). Sarcomere lengths and nuclear numbers were measured by ImageJ software. n > 10 cells per condition, three biological replicates. The lengths of ten sarcomeres from each cell were measured and averaged for each condition.
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4

Protein Expression Analysis in Stem Cells

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Cells were washed with PBS and lysed in RIPA buffer with Protease Inhibitor Cocktail (Bimake) on ice. Cell lysates were centrifuged (12,000 rpm) at 4 °C for 20 min and then quantified using the BCA Protein Assay Kit (Beyotime). The lysate was denatured with sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) sample loading buffer (Beyotime), followed by SDS–PAGE and electrotransfer to polyvinylidene difluoride membranes (Millipore, Darmstadt, Germany). The membranes were incubated overnight at 4 °C with anti-Sestrin2 (Proteintech Group 10795-1-AP 1:1000), anti-CD44 (Proteintech Group 15675-1-1AP 1:1000), anti-Sox2 (Proteintech Group 11064-1-AP 1:1000), anti-Oct4 (Proteintech Group 11263-1-AP 1:1000), anti-CXC chemokine receptor 4 (Cxcr4) (Proteintech Group 11073-2-AP 1:1000), anti-β-catenin (Proteintech Group 51067-2-AP 1:1000) and anti-β-actin (Proteintech Group 20536-1-AP 1:1000) at the appropriate dilution and then incubated with the secondary antibody at room temperature for 2 h. The bands were visualized using BeyoECL Plus (Beyotime).
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5

Western Blot Analysis of Stem Cell Markers

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Samples of tissue and cells were lysed by the compound of RIPA buffer and protease inhibitors (Sigma-Aldrich) for half an hour on ice after washed by phosphate-buffered saline (PBS) twice. Then the samples were centrifuged for 15 min in the condition of 14,000×g and 4 °C. Protein from tissue and cells was quantified by BCA assay kit (Beyotime, Jiangsu, China). Protein with equal quantity was transferred onto the polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA) after electrophoresed by SDS-PAGE. The membrane was sealed with bovine serum albumin (BSA) and hatched with primary antibodies at 4 °C overnight, then the secondary antibodies at room temperature for one hour. The primary antibodies for experiments contained anti-DDX27 (1:2000, Abcam, USA), anti-SOX2 (1:1000, Proteintech, China), anti-OCT4 (1:1000, Cell Signaling Technology, USA) and β-actin (1:2000, Proteintech, China). Membranes were tested with an enhanced chemiluminescence detection kit (BOSTER, USA).
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6

Western Blot Analysis of Stem Cell Markers

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Different cell lines were lysed in radioimmunoprecipitation assay (RIPA) buffer containing protease inhibitor cocktail (PIC) and phosphatase inhibitor cocktails 2 and 3 (Sigma-Aldrich, St. Louis, MO, USA). Proteins (20-40 μg) were loaded into 10-12% Tris-Acrylamide gels. The bands were detected using the following primary antibodies: anti-SOX2, OCT4, NANOG, α-tubulin and transforming growth factor beta 1 (TGF-β1) antibodies (Proteintech, Wuhan, Hubei, China); anti-β-actin, IL20RA, p-STAT3 (Tyr705), STAT3, interferon gamma (IFN-γ), IL-2, and tumor necrosis factor alpha (TNF-α) antibodies (Santa Cruz Biotechnology, Dallas, TX, USA); anti-PD-L1 antibody (Novus Biologicals, Centennial, CO, USA); anti-JAK1 and p-JAK1 antibodies (Abcam, Cambridge, UK); and proper horseradish peroxidase-conjugated secondary antibodies.
β-actin or α-tubulin was detected as the loading control. The densitometry of each band was analyzed using ImageJ software (National Institutes of Health, Bethesda, MD, USA), then compared with that of β-actin or α-tubulin of each sample to obtain the normalized relative expression (RE) values for each band.
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7

Protein Expression Analysis of Stem Cells

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The total cellular proteins were extracted using RIPA Lysis Buffer (Solarbio), electrophoresed by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE), labeled with target antibodies, including anti‐NANOG (Novus Biologicals, CO, USA), anti‐OCT 3/4, anti‐AFP, anti‐ZO‐1 (Invitrogen Antibodies, CA, USA), anti‐SOX 2, anti‐α‐SMA, anti‐NEFM, anti‐PCNA, anti‐Occluding, and anti‐β‐actin (Proteintech Group, IL, USA) that were detected with ECL Prime Western Blotting Detection Reagent. The relative level of protein expression was calculated based on that of β‐actin as internal control.
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8

Protein Expression Analysis of Stem Cells

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Cells were lysed using lysis buffer and extracted for 20 min on ice. Whole-cell extractprotein (30 μg) was subjected to electrophoresis on 10% SDS-PAGE gel and transferred to nitrocellulose membranes. Then membranes were incubated with the following primary antibodies: rabbit anti-Nanog, anti-Oct-4, anti-Sox-2 (dilution 1:1000, Proteintech, Rosemont, USA), rabbit anti-DNMT1, anti-DNMT3A, anti-DNMT3B (dilution 1:1000, Cell Signaling Technology, Danvers, MA, USA), and rabbit anti-GAPDH (dilution 1:2000, Antgene, Wuhan, China).
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9

Western Blot Analysis of Cell Signaling

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Western blot was performed as we previously reported [25 (link)]. The antibodies used in this article are listed as follows: anti-p57 (1 : 500, Cell Signaling Technology, Danvers, Massachusetts, USA), anti-p53 (1 : 500, Wanleibio, Xi'an, China), anti-p-p53 (1 : 500, Wanleibio, Shenyang, China), anti-GAPDH (1 : 5000; Genesci, Beijing, China), anti-PCNA (1 : 1000, Boster, Wuhan, China), anti-Cyclin A (1 : 300, Santa Cruz, Dallas, Texas, USA), anti-Cyclin E (1 : 300, Santa Cruz), anti-OCT4 (1 : 500, Santa Cruz), anti-NANOG (1 : 500, PeproTech, Rocky Hill, New Jersey, USA), anti-SOX2 (1 : 1000, Proteintech Group, Rosemont, Illinois, USA), horse-radish peroxidase-conjugated anti-rabbit antibody (1 : 3000, Boster), and anti-mouse antibody (1 : 2000; Boster).
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10

Western Blot Analysis of Glycolytic Enzymes

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Total cell lysates were prepared in 1× SDS buffer. An equal amount of proteins were separated by SDS-PAGE gel electrophoresis and transferred onto polyvinylidene difluoride membranes. The following antibodies were used for western blotting: anti-HNRNPK (Abcam, ab39975), anti-PTBP1 (Invitrogen, 324800), anti-PFKP (Proteintech, 13,389), anti-ALDOC (Proteintech, 14,884), anti-TPI1 (Proteintech, 10,713), anti-LDHA (Proteintech, 14,824), anti-PGK1 (Proteintech, 17,811), anti-SOX2 (Proteintech, 11,064), anti-H3 (Abcam, ab1791), anti-ACTB (Proteintech, 60,008-1-Ig), OCT4 (Santa Cruz, sc-8628). The blots were developed with ECL Plus Western Blotting Substrate (Thermo Scientific), and imaged by the FluorChem M System (ProteinSimple).
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