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On targetplus non targeting control pool d 001810 10

Manufactured by Horizon Discovery

The ON-TARGETplus Non-targeting Control Pool (D-001810-10) is a set of four non-targeting control siRNA duplexes designed to have minimal sequence homology to any known gene sequences in human, mouse, and rat genomes. This pool is intended to serve as a negative control for RNA interference (RNAi) experiments.

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2 protocols using on targetplus non targeting control pool d 001810 10

1

Depletion of Endocytic Regulators

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All siRNA sequences as well as ON-TARGETplus Non-targeting Control Pool (D-001810-10) sequences were purchased from Dharmacon. Dynamin-2 or BiP (GRP78) or Rab5 and 7 were depleted using the following siRNA sequences: dynamin-2 antisense sequence, 5′-GAC​AUG​AUC​CUG​CAG​UUC​AUU-3′; BiP siRNA, 5′-…CGA​GUG​ACA​GCU​GAA​GAC​AAG​GGU​A-3′; Rab5 siRNA, 5′-GGA​AGA​GGA​GUA​GAC​CUU​A-3′; and Rab7 siRNA, 5′-GCU​GCG​UUC​UGG​UAU​UUG​A-3′. Cells were transfected with indicated siRNAs using either a Santa Cruz Biotechnology transfection reagent or an Amaxa Nucleofector (Lonza) electroporation system as previously described (Chavez et al., 2015 (link); Yazbeck et al., 2017 (link)).
ECs were cotransfected with WT-S1PR1-GFP, Y143D-S1PR1-GFP, or Y143F-S1PR1-GFP cDNAs along with GTPase-defective dynamin (K44A) or control vector using Amaxa reagent. 24 h after transfection, cells were serum starved and then processed either for imaging or for biochemical analysis (Chavez et al., 2015 (link)). The transfection efficiency for GFP was 90%, while efficiency for S1PR1, dynamin, and other cDNAs, which include BiP, ER-mCherry, HA-tagged S1PR1 cDNAs and S1PR1-Dendra2, ranged between 40% and 60%.
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2

Silencing LIN28B in Naive CD4+ T Cells

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Naïve CD4+ T cells were isolated from fetal spleen as described above. Cells were plated in 96-well U-bottom plates at 5×105 cells/mL in Accell Delivery Media (GE Dharmacon) supplemented with 2.5% FBS, penicillin, streptomycin, and L-glutamine. Accell siRNAs were resuspended in 1× siRNA buffer to a concentration of 100 uM and used at a final concentration of 0.1 pmol/1×105 cells. Cells were incubated with siRNA for 3 days, at which point they were transferred to 96-well U-bottom plates pre-coated with α-CD3 antibody and stimulated as described above. Additional siRNA was also added to cultures at this time point. siRNAs used were SMARTpool ON-TARGETplus LIN28B (L-028584-01) and ON-TARGETplus Non-targeting Control Pool (D-001810-10) (GE Dharmacon).
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