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7 protocols using α crystallin

1

β2m Fibrillogenesis Monitoring

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Fibrillogenesis was carried out in glass vials stirred at 750 rpm at 37 °C using 50 μm β2m isoforms in PBS, pH 7.4. Aggregation was monitored by thioflavin T (ThT) emission at 480 nm after excitation at 445 nm (13 (link)). β2m, which remained soluble during aggregation, was monitored by native gel electrophoresis. The soluble fraction was separated by centrifugation at 20,817 × g for 10 min before loading onto 1% agarose gel and bands were quantified with Quantity One software (Bio-Rad). Fibrillogenesis experiments were also conducted in the presence of 10 μm α-crystallin (Sigma).
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2

Membrane Lipid and Protein Interactions

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DMPC (14:0–14:0 PC), SOPC (18:0–18:1 PC), DOPC (18:1–18:1 PC), PAPC (16:0–20:4 PC), and Cholesterol (Chol) were purchased from Avanti Polar Lipids, Inc. (Alabaster, AL, USA). The cholesterol analog cholestane spin-label (CSL) and bovine eye lens α-crystallin were purchased from Sigma Aldrich (St. Louis, MO, USA), where α-crystallin was used without further purification. Based on the information (αA = 19.8 kDa, αB = 22 kDa, and αA:αB = 3:1), the average molecular weight for the α-crystallin subunit was estimated to be 20.35 kDa. Preparation of membranes, α-crystallin, and α-crystallin membrane association studies was performed in HEPES buffer (10 mM HEPES, 100 mM NaCl, pH = 7.4).
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3

Analyzing O-GlcNAcylation in Human Brain Tissue

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All reagents and solvents were acquired from Fisher Scientific and were used as received unless otherwise stated. Electrophoresis and western blotting were performed by using Bio-Rad equipment. Primary antibodies were obtained from various sources: O-GlcNAc antibody from Biolegend, GAPDH antibody from R&D Systems, and PARP antibody from TACS. α-Crystallin was purchased from Sigma–Aldrich. Photomicrographs were acquired on a BZ-X700 Keyence Microscope, and all images were processed by using ImageJ software. Statistical analysis and graph generation was completed by using GraphPad Prism 7 software. Human brain tissue specimens were obtained from the Harvard Brain Tissue Resource Center. The human tissue array MC245a was purchased from US Biomax.
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4

Membrane Interactions with α-Crystallin

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Lipids, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC), egg sphingomyelin (SM), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylserine (POPS), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE), and cholesterol (Chol), were purchased from Avanti Polar Lipids, Inc. (Alabaster, AL, USA). The bovine eye lens α-crystallin, cholesterol analog cholestane spin-label (CSL), HEPES, and sodium chloride (NaCl) were purchased from Sigma Aldrich (St. Louis, MO, USA). The α-crystallin (C4163) was used without further purification. HEPES buffer (10 mM HEPES, 100 mM NaCl, pH = 7.4) was used to dissolve α-crystallin, prepare membranes, and prepare mixed α-crystallin and membrane samples for EPR measurements. The Sigma Aldrich provided information that αA = 19.8 kDa, αB = 22 kDa, and αA:αB = 3:1. Based on this information, the average molecular weight of the α-crystallin subunit was estimated to be 20.35 kDa.
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5

Quantification of Soluble Alpha-Crystallin

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After optical evaluation, lenses were homogenised in 8 mL Tris-HCl buffer pH 8.4 containing 0.02% sodium azide water soluble as described in Section 2.5. Water soluble (WS) fractions were prepared as mentioned above in Section 2.5 and separated into fractions based on size using HPLC (Shimadzu LC-2010AHT, Shimadzu Corporation, Kyoto, Japan) comprising a quaternary pump, an automatic sampler, and a UV (280 nm) detector with data acquisition (Lab solutions software version 5.42 SP5, Shimadzu Corporation, Japan) and a size exclusion column, Yarra-SEC 4000 (3 μm; 300 mm × 7.8 mm, Phenomenex Corporation, UK), maintained at 40°C. The mobile phase comprised of 50 mM sodium phosphate pH 6.8/0.15 M sodium chloride. The isocratic flow rate was 1.0 mL/min. Purified α-crystallin was purchased from Sigma-Aldrich and used as a reference. The percentage (%) of soluble α-crystallin fraction was estimated as follows: α-crystallin  fraction  %=AUCsAUCc100, where AUCs and AUCc are the area under the size exclusion (SE) chromatograms for α-crystallin fraction of the sample and negative control, respectively, and a representative chromatogram is shown as in Supplementary Figure 2 (in Supplementary Material available online at http://dx.doi.org/10.1155/2016/3240261).
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6

Immunopurification and SDS-PAGE Analysis of GFP-TAB2

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α-Crystallin was ordered from Sigma-Aldrich (St. Louis, MO). Overexpressed GFP–TAB2 was immuno-purified from HEK293A cells by Chromotek GFP-Trap agarose beads (Allele Biotech, CA). The SDS–PAGE gel band corresponding to GFP–TAB2 was cut out and digested.32 gCTD (YSPTgSPS, gS = O-GlcNAcylated Ser) and other chemicals and procedures are described in detail in Supplementary Methods.
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7

Synthesis of Glycosylated Peptides for O-GlcNAc Analysis

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Tetraethyl orthosilicate (98%, TEOS), toluene, ammonium hydroxide solution (28.0-30.0%), formaldehyde solution (ACS reagent, 37 wt. % in H2O), α-crystallin, dithiothreitol (DTT), iodoacetamide, PUGNAC, and ammonium formate solution (NH4FA, Bioultra, 10 M) and 3-[2-(2-aminoethylamino)ethylamino]propyl-trimethoxysilane (3APMS) were ordered from Sigma Aldrich (St. Louis, MO). Thiamet G was obtained from Cayman Chemicals. Trypsin (sequencing grade) was purchased from Promega (Madison, WI). Dulbecco's Modified Eagle's medium (DMEM), fetal bovine serum (FBS), and hydrogen peroxide solution (30%) were obtained from VWR chemicals. α2-3,6,8 Neuraminidase, O-Glycosidase, and PNGase F were purchased from NEB (Beverly, MA). The midi S-Trap columns were purchased from Protifi (Huntington, NY). Three O-GlcNAc peptides were custom synthesized by AnaSpec, Inc. (Fremont, CA): peptide #1: YSPT(O-GlcNAc)SPSK, MW 1069.5048; peptide #2: TAPTS(O-GlcNAc)TIAPG, MW 1118.5576; peptide #3: YSPT(O-GlcNAc)S(O-GlcNAc)SPSK, MW 1359.6162. Trifluoroacetic Acid (TFA, >99.5%), LC/MS grade formic acid (FA) and acetonitrile (ACN) were obtained from Fisher Scientific (Waltham, MA).
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