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6 protocols using phospho atms1981

1

Western Blot Analysis of DNA Damage Signaling

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Cells were lysed in 1× NuPAGE LDS sample buffer supplemented with 1× Bond-Breaker TCEP (Life Technologies) and 1× Halt protease and phosphatase cocktail (Life Technologies) on ice. The whole-cell lysates were sonicated briefly to break down the chromatin. Samples were boiled for 5 min at 95°C and then loaded to 4%–12% Bris-Tris SDS protein gel or 3%–8% Tris acetate SDS protein gel (Life Technologies).
The antibodies used were as follows: p53 (Calbiochem, DO-1), phospho-p53s15 (Cell Signaling, 9284), p21 (Calbiochem, OP64), DLX2 (Abcam, ab30339), γH2AX (Millipore, 05–636), vinculin (Sigma, V9131), phospho-ATMs1981 (Abcam, ab81292), ATM (Genetex, GTX70103), DNA-PKcs (Bethyl Laboratories, A300-517A), mTOR (Cell Signaling, 4517), ATR (Bethyl Laboratories, A300-137A), SMG1 (Bethyl Laboratories, A300-394A), TTI1 (Bethyl Laboratories, A303-451A), and TEL2 (ProteinTech, 15975-1-AP).
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2

Western Blot Analysis of DNA Damage Response

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Cell lysates were obtained using a lithium dodecyl sulfate sample buffer (NuPAGE, Invitrogen). Proteins were resolved on 8 to 15% tris-glycine gels and transferred onto polyvinylidene difluoride membranes. Blots were probed with commercially available primary antibodies and chemiluminescent detection using ECL Prime (Amersham). Antibodies such as Parp1 (#9542), phospho-p53 (S15) (#9284), ATM (#2873), phospho-Chk2 (Thr68) (#2197), p21 (#2947), and Puma (#4976) were purchased from Cell Signaling Technology; p53 (#sc-126), Mdm2 (#sc-965), and Wip1 (#sc-20712) from Santa Cruz Biotechnology; γH2A.X (#06-570) from Millipore; and phospho-ATM (S1981) (#ab81292) and phospho-p53 (S46) (#ab76242) from Abcam. Anti-actin (#A5316) from Sigma-Aldrich was used as a loading control.
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3

IHC Analysis of FFPE Tumor Sections

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Five-micron sections of FFPE tissue were mounted on slides, deparaffinized in xylene, and rehydrated in a graded ethanol series. For IHC, antigen retrieval was performed in citrate buffer, pH 6 (VWR), and sections were permeabilized with 0.2% Triton X-100 in PBS. Sections were blocked in 5% goat serum in PBS for 30 min, then incubated overnight in blocking solution with primary antibody at 4°C. Primary antibodies included: phospho-histone H2AXS139 (Cell Signaling Technology #9718); S9.6 (Millipore Sigma #MABE1095), cleaved caspase 3 (Cell Signaling Technology #9664); phospho-ATMS1981 (Abcam #81292); phospho-Chk2T68 (Cell Signaling Technology #2917); progesterone receptor A/B (Cell Signaling Technology #3153). Sections were washed and treated with 0.3% hydrogen peroxide, and signal was developed using the VectaStain Elite ABC-HRP kit with DAB substrate (Vector Laboratories). Sections were counterstained with hematoxylin. IHC staining of PDX tumors was quantified in 3 representative microscopic fields/tumor at 200x magnification using Halo software (Indica Labs).
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4

Examining DNA Damage Signaling in A549 Cells

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Example 7

A549 cells were treated with XJB-lapachone at the concentrations indicated in FIG. 5. Western blot was performed 4 4 after treatment to examine the activation of DNA damage signaling. Antibodies used in the Western Blot were β-actin (AC-15) and ATM (MAT3-4G10/8) (from Sigma); Chk1 (2G1D5), phospho-Chk2 (Thr68) (C13C1), Chk2 (1C12) (from Cell Signaling Technology); phospho-Chk1 (Ser317) (from R&D systems); and phospho-ATM (S1981) (from Epitomics). FIG. 9 shows that XJB-lapachone induces DNA damage.

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5

XJB-lapachone Induces DNA Damage

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Example 7

A549 cells were treated with XJB-lapachone at the concentrations indicated in FIG. 5. Western blot was performed 4 4 after treatment to examine the activation of DNA damage signaling. Antibodies used in the Western Blot were β-actin (AC-15) and ATM (MAT3-4G10/8) (from Sigma); Chk1 (2G1D5), phospho-Chk2 (Thr68) (C13C1), Chk2 (1C12) (from Cell Signaling Technology); phospho-Chk1 (Ser317) (from R&D systems); and phospho-ATM (S1981) (from Epitomics). FIG. 9 shows that XJB-lapachone induces DNA damage.

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6

Western Blot Analysis of DNA Damage Signaling

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Western blot was performed as we previously described (51 (link)). Primary antibodies against ATM and β-actin were obtained from Sigma-Aldrich. Drp1 was from BD Biosciences. Phospho-Drp1 (Ser616), phospho-Chk2 (Thr68), and Chk2 were from Cell Signaling Technology. Phospho-ATM (S1981) was from Epitomics. Complex I subunit NDUFS3, Complex I subunit NDUFB6, and Complex IV subunit II were from abcam.
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