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Zeocine

Manufactured by Thermo Fisher Scientific
Sourced in Italy, United States

Zeocine is a selective antibiotic used for the screening and selection of transformed cells in molecular biology experiments. It functions as an inhibitor of protein synthesis, allowing for the identification of cells that have successfully incorporated a gene of interest.

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14 protocols using zeocine

1

Stable Expression and Purification of ADAMTS17S-A

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HEK293 cells (ATCC, Manassas, VA) were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% FBS, 100 units/mL penicillin, 100 μg/mL streptomycin in a 5% CO2 atmosphere in a humidified incubator at 37°C. To stably express ADAMTS17S-A, the ADAMTS17S-A plasmid was transfected in HEK293 cells using Lipofectamine 3000 (ThermoFisher Scientific). After 24h DMEM medium was replaced with fresh DMEM supplemented with 0.5 mg/mL zeocine (ThermoFisher Scientific) for selection. The stable cells were expanded on 150 mm cell culture dishes, rinsed once with 20 mL PBS when confluent, and maintained in serum-free DMEM, which was collected every 48–72h. Medium was cleared of cell debris, pooled, and stored at −20°C. 1 L conditioned medium was concentrated to ~25 mL using an Amicon Ultrafiltration Unit (MilliporeSigma) with a 10 kDa molecular-weight cut-off membrane. The concentrated medium was cleared by centrifugation for 10 minutes at 10 000 rpm in a Beckman J17 rotor and applied to a Capturem Maxiprep Nickel Column (Takara Bio USA) according to the manufacturer’s protocol. The filtrate was reapplied once. The resin was washed with 20 mmol/L imidazole diluted in the supplied wash buffer, and bound protein was eluted with 2 × 750 μL elution buffer (eluate 1 and 2). The quality of the eluted protein was evaluated by SDS-PAGE using a 10% polyacrylamide gel.
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2

Expressing and Maintaining SLO3-LRRC52 HEK-293 Cells

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HEK-293 cells stably expressing SLO3 and LRRC52 were provided by Jerod Denton (Vanderbilt University) and maintained in DMEM complete, composed of Dulbecco’s Modified Eagle Medium supplemented with 700 μg/mL Zeocine, 10% FBS, and 1% Penicillin-Streptomycin (Thermo Fisher Scientific). Cells were grown on plastic Petri dishes and flasks at 37 °C and 5% CO2 in a Galaxy 170 S incubator (Eppendorf). Prior to patching, flasks at ~80% confluence were rinsed with Hank’s balanced salt solution followed by disassociation with trypsin-EDTA (Thermo Fisher Scientific). Suspended cells were diluted in DMEM complete and distributed to 9.2 cm2 Petri dishes coated with 1 μL 2% Matrigel® Basement Membrane Matrix (Corning) in Minimum Essential Medium (Thermo Fisher Scientific).
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3

Derivation of Germline Cells from ESCs

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ESC clones carrying both the Nanog transgene and a CAG monomeric Kusabira-orange (mKO) fluorescence reporter were selected by neomycin (Sigma-Aldrich) and zeocine (Life Technologies). D4 PGCLCs were induced from D2 EpiLCs with Nanog and used for derivation of EGCLC. For ESC or D4 PGCLC injections, GOF-GFP ESCs were co-transfected with a vector, which enabled inducible expression of Nanog and constitutive expression of Venus, a variant of EGFP. For D4 PGCLC, after induction of PGCLCs with Nanog, cells were stained with PE conjugated-CD61 antibody (1:10, Biolegend, 104308) and Alexa660 conjugated-SSEA-1 antibody (2.5 μl/ 105 cells, eBioscience, clone eBioMC-480, 50-8813) according to the manufacturer’s instructions. Double positive PGCLC cells were collected by using a S3 cell sorter (Biorad). Embryos for chimera experiments were obtained from CBA/C57BL/6 F1 crossed with C57BL/6 mice. Blind tests or randomization methods were not used. The sex of embryos was not determined. Manipulations of embryos were performed as described previously37 . Briefly, five cells were injected into a morula, which were subsequently cultured in KSOM (Millipore). At the following day, the embryos were transferred into the uteri of pseudopregnant mice. All embryos were analysed one week after embryo transfer, which corresponded to embryonic day 9.5.
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4

Culturing Human Embryonic Kidney Cells

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Human embryonic kidney 293T (HEK293T) cells (ATCC CRL-3216) were cultured in RPMI GlutaMAX (Invitrogen) supplemented with 10% FBS (GE Healthcare) and 100 units/mL penicillin and 100 μg/mL streptomycin (P/S; Invitrogen). L cells (ATCC CRL-2648) were cultured in DMEM containing 1 g/L glucose (Life Technologies), supplemented with 10% FCS and P/S. All cells were maintained at 37 °C in 5% CO2. L cells stably expressing and secreting Wnt3a or Wnt3a–iFlag were cultured in the presence of 125 μg/mL Zeocine (Life Technologies) to obtain Wnt3a-conditioned medium (35 (link)). For Luciferase reporter assays, microscopy, and BN/PAGE, transfections were performed by using the FuGENE6 transfection reagent according to the manufacturer’s instructions (Promega). For immunoprecipitations, cells were transfected by using polyethylenimine. siRNA transfections were performed with Dharmafect1 (Dharmacon) transfection reagent, according to the manufacturer’s instructions. TMEM59 siRNAs and GAPDH control siRNAs were from Dharmacon and used at a concentration of 10 or 20 nM.
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5

Esrrb Modulates Paracrine Hedgehog Signaling

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All cell lines used in this study were obtained commercially, and we did not conduct any animal work to obtain them. Paracrine Hh-responsive mouse embryonic fibroblast cells NIH3T3 were obtained from American Type Culture Collection (ATCC, Cat. No. CRL-1658). NIH3T3 cells are cultured in DMEM supplement with 10 % Newborn Calf Serum (NBCS). The cells were transfected with pcDNA3.1 (Zeo+) empty vector (Promega, Madison, WI) as control, or pcDNA3.1 (Zeo+)-Esrrb expression vector using Fugene HD (Promega, Madison, WI), and were further selected by supplementing 150 μg/ml Zeocine (Invitrogen, Grand Island, NY) to the culture medium for 3 weeks. Two independent transfections were performed and established cells from each transfection were pooled together. Cells were cultured until confluent, and are treated with 1:100 diluted Hh-CM for 48 h, in phenol-red free DMEM supplement with 5 % NBCS. The Hh-CM treatment was controlled by the same dilution of medium cultured HEK293 cells that do not express Shh N-terminus transgene.
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6

Enzymatic Hydrolysis of Polymeric Substrates

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Substrate 4-nitrophenyl butyrate (pNPB) and salts monosodium phosphate and disodium phosphate were purchased from Sigama Aldrich. Zeocine was purchased from Invitrogen. All the media components used 10 (link) were also procured from Sigma Aldrich. The polymeric substrates PCL (Tone grade 787, Mw = 80 000,) was purchased from Dow Corning. Polybutylene succinate adipate (PBSA) (Bionelle 3001MD, Mn=23,300,) was a kind gift from Showa Denko. The polymeric films were prepared by compression molding the crystallinity of the films was determined using Differential scanning calorimetric analysis and was found to be 50-55% and 30-35% for PCL and PBSA respectively.
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7

Enzyme Kinetics with Synthetic Polymers

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Substrate 4-nitrophenyl butyrate (pNPB) and salts monosodium phosphate and disodium phosphate, sodium acetate and sodium borate were purchased from Sigma-Aldrich. Zeocine was purchased from Invitrogen. All the media components used (Liu et al. 2009 (link)) were also procured from Sigma-Aldrich. The polymeric substrates polycaprolactone (PCL) (mol wt Mn = 84,000) was a gift from DOW. PCL films were casted by the compression molding, and the crystallinity (30– 35 %) was determined using differential scanning calorimetry. Cellulose diacetate (CA) films were obtained form Grafix Plastics, and the degree of substitution of 2 was confirmed by NMR analysis.
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8

Heterologous expression of Lip11 lipase

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Restriction enzymes were purchased from New England Biolabs (NEB), USA. Taq polymerase and T4 DNA ligase were purchased from Bangalore Genei, India. Gel extraction kit and plasmid isolation kit were purchased from Qiagen, India. Recombinant yeast strain P. pastoris X-33 harbouring Lip11 gene from Yarrowia lipolytica was taken from the laboratory culture collection. This strain has been submitted to Microbial Type Culture Collection (MTCC) with MTCC number 9517. Zeocine was from Invitrogen. The triacylglycerides, p-np esters used in the experiments were procured from Sigma Aldrich. Luria bertani, tryptone, yeast extract, yeast nitrogen base and methanol were purchased from Hi-Media. Sodium chloride was taken from Sisco Research Laboratories Pvt. Ltd. India (SRL). Glycosylation kit was procured from G Bioscience (USA).
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9

HeLa Cell Line Engineering for APE1 Study

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Inducible HeLa cell clones silenced for endogenous APE1 and reconstituted with the ectopic FLAG-tagged APE1 form were used11 (link). HeLa cell clones were grown in Dulbecco’s modified Eagle’s medium (Invitrogen, Monza, Italy) supplemented with 10% v/v fetal bovine serum (Euroclone, Milan, Italy), 100 U/ml penicillin, 10 μg/ml streptomycin sulphate, 3 μg/ml blasticidin, 100 μg/ml zeocine, 400 μg/ml geneticin (Invitrogen), and cultured in a humidified incubator containing a 5% CO2 atmosphere, at 37 °C. For inducible APE1-shRNA experiments, doxycycline (1 μg/ml) (Sigma-Aldrich, St. Louis, MO) was added to the cell culture medium and cells were grown for 10 days. JHH-6 cells (undifferentiated hepatocellular carcinoma)31 (link) were cultured in William’s medium E (Sigma-Aldrich), while A549 (adenocarcinomic human alveolar basal epithelial cells)32 (link) cells were cultured in RPM1 (Euroclone); both cell cultures were supplemented with 10% v/v fetal bovine serum, 100 U/ml penicillin, 10 μg/ml streptomycin sulphate. All cell lines were tested for mycoplasma contamination (N-GARDE Mycoplamsa PCR Reagent, Euroclone).
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10

Expression of Recombinant H5 Hemagglutinin

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The DNA encoding the extracellular domain of HA with deletion of the cleavage site (EpiFluDatabase Accession No. EPI15789) from H5N1 avian influenza virus (A/swan/Poland/305-135V08/2006 clade 2.2.2) was cloned into pJAZs1 vector using BsaI (Thermo Scientific, USA) and pPICZαC using ClaI and NotI restriction sites. pJAZs1/H5Man5 and pPICZαC/H5hm plasmids were linearized with PmeI (Thermo Scientific, USA) and used for the electroporation of the SuperMan5 (GlycoSwitch, Biogrammatics, USA) and KM 71 (his4, aox1:ARG4, arg4) (Invitrogen, USA) P. pastoris strains. Positive clones were transformed to a fresh YPD agar plate with Zeocine (Invitrogen, USA). The yeast transformants were screened for insertion by PCR with 5′ AOX I and 3′ AOX I primers. Yeast clones with verified inserts were grown as previously described (23 (link)). The presence of recombinant proteins both in medium and cells (control) was detected by SDS-PAGE and Western blotting.
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