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6 protocols using lps pg ultrapure

1

Antibody Responses to Bacterial Substances

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IgG and IgA antibody responses to the three bacterial substances, ultrapure E.coli-LPS (O111:B4) (List Biological Laboratories, Campbell, CA), ultrapure Pg-LPS (InvivoGen, San Diego, CA), and PG-PS (Lee Laboratories, Grayson, GA), and a synthetic cyclic citrullinated peptide (Biosynthesis, Lewisville, TX) were assayed by ELISA using the ChonBlock™ buffer system (Chondrex, Inc., Woodinville, WA) [47 (link)].
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2

Isolation and Sonication of PGDHC

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PGDHC was isolated from Porphyromonas gingivalis (ATTC strain #33277) as previously described (20 (link)). For biological experiments, PGDHC was sonicated (2 min, 3 W) in phosphate-buffered saline (PBS) to achieve a concentration of 100 μg/ml. Ultrapure Pg-LPS was purchased from InvivoGen and prepared according to the manufacturer’s recommendation.
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3

Macrophage Infection Dynamics with P. gingivalis

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Macrophages were infected with viable P. gingivalis, heat-killed P. gingivalis (HK-Pg), OMVs or heat-inactivated OMVs (HI-OMVs) at a multiplicity of infection (MOI) of 10:1, 25:1 or 100:1 bacilli or OMV/cell for 2 h. After 2 h the extracellular bacteria/OMVs were removed and the macrophages were washed with PBS and then treated with fresh media (containing 100 U/ml penicillin, 100 μg/ml streptomycin to kill any remaining extracellular bacteria), and M-CSF (2,000 U/ml) for 24 h. This stimulation protocol was used throughout the study and based on our initial dose-response experiments (see Supplementary Figures 2A,B) and other studies (Taxman et al., 2012 (link); Cecil et al., 2016 (link); Waller et al., 2016 (link)) an MOI of 25:1 was chosen as the optimal dose for this study. For reference, OMVs (at an MOI of 25:1) was equal to a protein concentration of 3.0 μg/ml. In certain experiments cells were stimulated with P. gingivalis-derived LPS (Invivogen; LPS-PG Ultrapure at 100 ng/ml) for 24 h as indicated. These infection protocols were used throughout the study. In specific experiments the competitive gingipain inhibitors, KYT-1 and KYT-36 (Peptide Institute, Osaka, Japan) (Kadowaki et al., 2004 (link)) were included in the media (at 10 μM).
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4

Monocyte and T Cell Stimulation Protocol

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Purified CD14+ monocytes and CD4+T cells were cultured in RPMI 1640 medium (Life Technologies, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (Sigma-Aldrich, St. Louis, MO, USA), in a humidified atmosphere of 5% CO2 at 37 °C. CD14+ monocytes (1 × 106/mL) were either treated for 24 h with 1 µg/mL of LPS-PG Ultrapure (InvivoGen, San Diego, CA, USA) or left untreated as controls. CD4+T cells were stimulated for 24 h with plate-bound 2 µg/mL of anti-CD3 mAb and 1 µg/mL of anti-CD28 mAb (BD Biosciences).
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5

RAW 264.7 Macrophages Inflammatory Response

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The cell line of RAW 264.7 macrophages was purchased from the ATCC (Manassas, VA, USA). The cells were cultured in Dulbecco's modified Eagle medium (Wako, Tokyo, Japan) with 10% fetal bovine serum, 100 U/mL penicillin and 100 mg/mL streptomycin under 5% CO2 at 37°C in a humidified environment. The cells were incubated for 24 hours in the presence or absence of 10 µg/mL P. gingivalis LPS (LPS-PG Ultrapure, InvivoGen, San Diego, CA, USA) to induce an inflammatory response.
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6

Inflammasome Activation Assay Protocol

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For inducing NLRP3, NLRC4 and AIM2 inflammasomes activation, BMDMs at 1 × 106 cells/mL were seeded 0.5 mL in 24-well plates overnight. Then, 50 ng/mL LPS-PG Ultrapure (InvivoGen, San Diego, CA, USA) or 1 μg/mL Pam3CSK4 (InvivoGen) was used to stimulate BMDMs for 4 h, after which the medium was changed to Opti-MEM (Gibco) containing the main components from EF (epmedin A, epmedin A1, epmedin B, epmedin C, icariin, icaritin, icariside Ⅰ, ICS Ⅱ, anhydroicaritin; TargetMol, Boston, MA, USA), hydrogen peroxide (H2O2, Sigma, Darmstadt, Germany) or N-acetyl-l-cysteine (NAC, MedChemExpress). One hour later, the cells were stimulated for 1 h with ATP (5 mmol/L; Sigma) and nigericin (7.5 μmol/L; InvivoGen) or for 6 h with monosodium urate (MSU, 200 μg/mL; InvivoGen), silicon dioxide (SiO2, 250 μg/mL; InvivoGen) or Lfn-Flic (200 ng/mL, supplied by Dr. Tao Li). Cells were transfected with poly (I:C) (2 μg/mL; InvivoGen), poly(dA:dT) (2 μg/mL; InvivoGen) or LPS (1 μg/mL; InvivoGen) for 6 h through the use of Lipofectamine 2000 (Thermo Fisher Scientific, Rockford, MI, USA) according to the manufacturer's protocols. PMA-primed THP-1 cells were seeded at 1 × 106 cells/mL in 24-well plates overnight. Then, the cells were pretreated with ICS Ⅱ. One hour later, the cells were stimulated with nigericin (7.5 μmol/L) for 1 h. Cell extracts and precipitated supernatants were analyzed by immunoblot.
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