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Opticon monitor v 3

Manufactured by Bio-Rad
Sourced in United Kingdom

The Opticon Monitor v.3.1 software is a data analysis program designed for real-time PCR systems. The software provides tools for data collection, analysis, and result visualization during real-time PCR experiments.

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2 protocols using opticon monitor v 3

1

Genotyping of Pharmacogenomic Variants

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Genomic DNA was extracted from whole blood through use of the manufacturers protocol (E.Z.N.A Blood DNA Mini Kit; Omega bio-tek; Norcross, GA). Extracted DNA was quantified using NanoDrop (Thermo Fisher Scientific, Wilmington, DE). Genotyping was completed using real-time allelic discrimination polymerase chain reaction (PCR) assay on a DNA Engine Chromo4 system (Bio-Rad Laboratories, Hercules, CA). The PCR protocol followed denaturation at 95°C for 10 minutes, followed by 50 cycles of amplification at 92°C for 15 seconds and annealing at 60°C for 1 minute 30 seconds. Taqman Genotyping Master mix and assays CYP2B6 516G>T (rs3745274, catalogue number C___7817765_60), CYP2B6 983T>C (rs28399499, catalogue number C__60732328_20), CYP2B6 15582C>T (rs4803419, catalogue number C___7817764_10), CYP2A6 -48A>C (rs28399433, catalogue number C__30634332_10) CYP2A6*9B 1836G>T (rs8192726, catalogue number C__29560333_20) NR1I2 63396C>T (rs2472677, catalogue number C_2607845), NR1I3 540C>T (rs2307424, catalogue number C__25746794_20) and NR1I3 1089T>C (rs3003596, catalogue number C__16194070_10) were purchased from Life Technologies (Paisley, Renfrewshire, UK). Opticon Monitor v.3.1 software (Bio-Rad Laboratories) was used to obtain allelic discrimination plots and identify genotypes.
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2

Genotyping of NAT2 SNPs

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Total genomic DNA was isolated from whole blood using a QIAamp DNA minikit (Qiagen, Crawly, UK) according to the manufacturer’s instructions. Participants were genotyped, using a DNA Engine Chromo4 system (Bio-Rad Laboratories, Hercules, CA) and Opticon Monitor (v.3.1) software (Bio-Rad Laboratories), for 6 NAT2 SNPs, 282C>T, 341T>C, 481C>T, 857G>A, 590G>A, and 803A>G, using Life Technologies prevalidated probe-based TaqMan assays per the manufacturer’s instructions (Life Technologies, Paisley, UK). Each participant sample was analyzed in duplicate.
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