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9 protocols using fitc labelled phalloidin

1

Cellular Localization of SATB1 and E-cadherin

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To determine protein cellular localization for SATB1 and E-cadherin, immunofluorescence was performed using an A1Si laser-scanning confocal microscope. Briefly, BIU-87 and T24 cells transfected with pcDNA3.1-SATB1 and pGenesil2-SATB1-shRNA expression vectors were seeded onto glass coverslips and placed in 24-well plates. Cells were fixed with 4% paraformaldehyde for 30 min at 37°C after incubation for 3 days, and then washed with PBS twice for 10 minutes each. The fixed cells were permeabilized with 0.3% Triton- X 100 for 15 min, blocked in 10% goat serum for 1h, and then washed with PBS twice for 10 minutes each. Then the cells were incubated with primary antibody as follows: rabbit polyclonal antibody SATB1, and E-cadherin(Abcam Inc., Cambridge, CA, USA) (1:50) at 4°C overnight followed by detection with Cy5-conjugated secondary antibodies and FITC-labelled phalloidin (5μg/ml)(sigma) for 1 hour at room temperature in the dark. DAPI was subsequently used to stain nuclei. Images were collected using a Nikon A1Si laser-scanning confocal microscope (Nikon, Japan).
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2

Quantifying Cell Cytoskeleton Morphology

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Cells on coverslips were rinsed 3 times with PBS containing 0.9 mM Ca2+ and 0.49 mM Mg2+ (Sigma D8662) and fixed with 1% paraformaldehyde in 0.1 M HEPES (pH 7.4) for 15 min at room temperature. After being permeabilised cells were blocked with 1% BSA in PBS at room temperature for 30 min. FITC labelled phalloidin (Sigma) was added and incubated for 1 hr in the dark. Cells were washed, then left to air dry before mounting with vector shield containing DAPI and left to set at 4°C. Samples were examined with a Leica light microscope. Cell area was measured using ImageJ. 10 cells were measured from each isolate (n = 30 per time point).
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3

Morphological Analysis of hADSCs on Scaffolds

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The morphology of the cells on top of the scaffolds was observed after 1, 3 and 7 days of culture. 16.000 hADSCs in 1 mL of α-MEM culture medium (no glutamine, 5% human serum, 1% P/S) were cultured in direct contact with scaffolds. Culture medium was refreshed at day 2, 4 and 6. The control was 10 mm diameter glass coverslips (Marienfeld, Lauda-Konigshofen, Germany) in a 48-well plate.
At each time point, the cells were fixed with 4% (w/v) para-formaldehyde solution in PBS (AlfaAesar, Haverhill, MA, USA) for 15 min. Next, cells were permeabilized with 0.1% (v/v) Triton X-100 (Sigma Aldrich, St Louis, MO, USA) for 10 min. The nonspecific binding sites were blocked by incubating the scaffolds in Phosphate Buffered Saline (PBS) (Medicago AB, Uppsala, Sweden) containing 3% (wt/v) Bovine Serum Albumin (BSA, Sigma Aldrich, St Louis, MO, USA) for 45 min. Subsequently, the samples were incubated for 45 min with stains diluted in PBS. Cytoskeleton and nucleus were stained using FITC-labelled phalloidin (1:500) (Sigma Aldrich, St Louis, MO, USA P1951) and 4’,6-Diamidino-2-phenylindole dihydrochloride (1:2000) (DAPI, Sigma Aldrich, St Louis, MO, USA D9542), respectively. Finally, the samples were rinsed with PBS–BSA 0.5% and pure water and observed using a LSM800 confocal microscope (Zeiss, Iena, Germany).
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4

Immunofluorescence Imaging of Ad-MVFs and Islets

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ad-MVFs and Langerhans islets in 2D conditions and 3D collagen hydrogels containing in coculture ad-MVFs and islets were fixed in 3.7% formaldehyde (Sigma) for 10 min and permeabilized with 0.1% Triton X-100 (Sigma) for 5 min. The target proteins were recognized by the following monoclonal primary antibodies: Rabbit CD31 (1:500) (Abcam, Cambridge, UK), Mouse CD90 (1:300) (Abcam), and Mouse αSMA FITC conjugated (Sigma). In the same cases, αActin was detected using FITC-labelled phalloidin (1:300) (Sigma). The cell nuclei were stained by DAPI (1:20.000) (Sigma). Cells in 2D and 3D conditions were respectively observed under an OLYMPUS BX50 Fluorescence microscope and OLYMPUS IX70 confocal microscope.
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5

Immunofluorescence Assay for A/E Lesions

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HeLa cells were seeded onto polystyrene 24-well plates (CELLSTAR) containing glass coverslips and propagated at 37 °C under a 5% CO2 atmosphere, as previously described [6 (link)]. Strains were cultured overnight in DMEM or LB broth at 37 °C. HeLa cell monolayers were infected with ~107 of LB- or DMEM-grown bacteria and incubated for 3 h. After incubation, the cells were washed with PBS to remove unbound bacteria and the samples were fixed with 2% formalin/PBS for immunofluorescence. Primary rabbit anti-H6 antibodies were added for 1 h at 1:3000 dilution in 10% normal horse serum. After washing, the cells were incubated for 1 h with secondary anti-rabbit IgG Alexa fluor-conjugated antibodies diluted 1:3000. The cells were washed extensively and mounted in glycerol-PBS and visualized under a UV light using a Zeiss Axiolab microscope. FITC-labelled phalloidin (Sigma, St. Louis, MO, USA) was used in the FAS assay to detect A/E lesions as previously described [57 (link)]. Immunofluorescence images were taken with a 60× objective.
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6

Endothelial Cell Characterization Protocol

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All tissue culture reagents were from Euroclone SpA except ECGS and heparin (Sigma Aldrich, cat #E2759 and #H3149, respectively). NG-Nitro-L-arginine methyl ester (L-NAME, cat #N5751), methylcellulose (cat #M0512), FITC-labelled phalloidin (cat #P5282), and DAPI (cat #D9542) were from Sigma Aldrich; collagenase (cat #17454) and rat tail collagen I (cat #47254) from Serva; recombinant human VEGF165 (cat #100) from Peprotech; mitomycin (cat #BIA-M1183) from Tebu-bio. Primary antibodies used were: mouse monoclonals anti-eNOS (BD Transduction Laboratories, cat #610296) and anti-β-actin (Sigma Chemicals, cat #A2228), and rabbit polyclonal anti phospho-eNOS (Ser1177) (Cell Signalling Technology, cat #9571). HRP-conjugated secondary antibodies were from Dako (cat #P0260 and #P0399 for rabbit anti-mouse and swine anti-rabbit antibodies, respectively). A goat anti-mouse CY3 (cat #29-0382-75, GE Healthcare) was used in immunofluorescence experiments to detect eNOS.
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7

Myotube Differentiation and Treatment

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C2C12 myoblasts were plated on coverslips (5 × 103 cells/slice) and grown until 80% confluence. Cells were differentiated in myotubes in DM for 7 days. Differentiated myotubes were treated with 1 µM DEX in absence or presence of glucoraphanin (30 µM), L-cysteine (150 µM), and 3-mercaptopyruvate (150 µM) for 48 h. Afterward, cells were fixed and immunolabeled with either FITC-labelled phalloidin (1:40; Sigma-Aldrich, Milan, Italy) to stain filamentous actin and 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI, 1:2000; Sigma-Aldrich, Milan, Italy) to stain the nuclei. The evaluation of myotubes diameter, number of nuclei for myotube, and multinucleated cells were performed using image analysing software (ImageJ 1.48). Morphometric analysis was carried out by collecting at least three independent fields through a 20 × 0.5 NA objective and micrographs to be analysed were taken using a motorized Leica DM6000B microscope equipped with a DFC350FX camera (Leica, Mannheim, Germany).
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8

Immunofluorescence Imaging of HA-Tagged Proteins

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Cells were transferred to 8-mm round wells on a slide glass, fixed with 3.7% paraformaldehyde and permeabilized with 0.2% Trition X-100/PBS as previously described37 (link). The cells were then reacted with anti-HA 16B12 mouse monoclonal antibody (1:1000) (Biolegend, 901513). The samples were then reacted with Alexa Fluor 568-conjugated anti-mouse secondary antibody (1:1000) for 1 h and FITC-labelled phalloidin (Sigma, P5282). The samples were examined on a Carl-Zeiss LSM780 confocal laser-scanning microscope. Images were further analysed using LSM780 software.
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9

RGD-Functionalized DNA Nanostructure for Cell Targeting

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All synthetic oligonucleotides (Tables S1 and S2) were purchased from Shanghai Sangon Biological Engineering Technology & Services Co., Ltd (Shanghai, China). The dNTP mix was purchased from NEB (New England Biolabs, Ipswich, MA, USA). T4 DNA ligase, T4 PNK and Phi29 DNA polymerase were purchased from Life Technologies (Carlsbad, CA, USA). RGD (Arg-Gly-Asp) was purchased from Abcam (Cambridge, MA, USA). Sulfo-SMCC (sulfosuccinimidyl-4-(N-maleimidomethyl)cyclohexane-1-carboxylate) was purchased from AAT Bioquest (Sunnyvale, CA, USA). TCEP (trichloroethyl phosphate) was purchased from YEASEN (Shanghai, China). FITC labelled phalloidin was purchased from Sigma-Aldrich (St. Louis, MO, USA). A Leica TCS SP5 laser scanning confocal microscope was used for fluorescence imaging. An EnVision Multimode Plate Reader (PerkinElmer) was used for measuring the fluorescence signal. A CFX 96 real-time PCR detection system (Bio-Rad) was used for controlling the reaction temperature for rolling circle amplification and for measuring the real-time fluorescence signal of the real-time quantitative PCR for mRNA detection. A NanoDrop 2000 UV-Vis Spectrophotometer was used for measuring the nucleic acid concentration. A Wyatt DynaPro NanoStar was used for DLS measurement. A BD FACS Calibur was used for cell flow cytometry analysis.
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