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4 protocols using ab86135

1

Cell Culture Maintenance and Genetic Manipulation

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HuH-7 and HEK293T cells were maintained in Dulbecco's modified Eagle medium (DMEM, Gibco) supplemented with 10% fetal bovine serum (FBS) and 1% penicillin-streptomycin (Pen Strep, Gibco) in a 37°C humidified incubator with 5% CO2. BHK-21 cells were propagated in RPMI Medium 1640 (Gibco) supplemented with 10% FBS and 1% Pen Strep at 37°C with 5% CO2. C6/36 cells were maintained in RPMI media supplemented with 2% fetal calf serum (FCS) at 28°C. Tetracycline-inducible cell lines were generated using the Flp-In T-REx system (Thermo Fisher Scientific) according to manufacturer's protocol. After introduction of transgenes, HEK-293 Flp-In T-REx cells were grown in medium with 100 µg/mL of hygromycin B and 15 µg/mL of blasticidin. The following primary antibodies were utilized during western blotting, RNA immunoprecipitation, and focus formation assay techniques: rabbit G3BP1 antibody (A302-033; Bethyl Laboratories), rabbit G3BP2 antibody (ab86135; Abcam), rabbit CAPRIN1 antibody (15112-1-AP; Proteintech Group), rabbit DDX6 antibody (A300-460A; Bethyl Laboratories), rabbit QKI antibody (A300-183A; Bethyl Laboratories), mouse FLAG antibody (F3165; Sigma), mouse IgG antibody (12–371; Millipore) as isotype control, mouse pan-actin (MAS-11869; Thermo Fisher Scientific), and mouse pan flaviviral envelope 4G2 antibody.
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2

Immunostaining of Stress Granule Proteins

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Cells were grown on coverslips, washed with PBS and fixed for 20 min in 4% PFA. Cells were then permeabilized in 0.5% Triton X-100 for 3 min. After blocking, cells were immunostained for 1 h with a primary antibody, and after subsequent washes the cells were incubated for 1 h with fluorescently labeled secondary antibodies. Primary antibodies: goat anti-TIA-1 (Abcam, ab40693; 1:200), rabbit anti-eIF4B (Abcam, ab68474; 1:200), mouse anti-G3BP1 (Abcam, ab56574; 1:200), rabbit anti-G3BP2 (Abcam, ab86135; 1:1000), rabbit anti-α-tubulin (Abcam, ab4074; 1:400). Secondary antibodies: Alexa Fluor 488-labeled goat anti-mouse IgG and anti-rabbit IgG, Alexa Fluor 594-labeled goat anti-mouse IgG and anti-rabbit IgG (all from Abcam; 1:1000) and Alexa Fluor 647-labeled donkey anti-rabbit IgG (Life Technology; 1:1200). Nuclei were counterstained with Hoechst 33342 (Sigma), and coverslips were mounted in mounting medium (made in house).
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3

Western Blot Analysis of Cell Signaling

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Cell lysate was collected using RIPA lysis buffer. The cell protein mass of each lysate was determined by BCA Protein Assay Reagent (Pierce, IL). Proteins were separated using 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to membranes (0.22 μm, Sigma) and incubated with primary antibodies at 4°C overnight. The primary antibodies are as follows: antibodies against VEGFA (1/1000; ab1316, Abcam), TGFβ1 (1/1000; ab215715, Abcam), Angiopoietin-1 (1/20000; ab183701, Abcam), ZO-1 (1/1000; ab216880, Abcam), Occludin (1/1000; ab216327, Abcam), Claudin-5 (1/1000; ab131259, Abcam), G3BP2 (1/2000; ab86135, Abcam), p-p38 (1/1000; ab195049, Abcam), p38 (1/2000; ab170099, Abcam), p-p53 (1/2000; ab33889, Abcam), p53 (1/1000; ab26, Abcam), and GAPDH (1/500; ab8245, Abcam). Next, the membranes were incubated with HRP-conjugated secondary antibody IgG (1/2000; ab7090, Abcam) at room temperature for 2 h. GAPDH antibody served as a negative control. At last, the protein bands were visualized by an ECL Western Blotting Substrate Kit (ab65623, Abcam) and quantified by the ImageJ software.
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4

Antibodies for Western Blot and Immunofluorescence

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The antibodies used for Western blot analysis and immunofluorescence included mouse anti-HA (1:2000 for Western blot and 1:800 for immunofluorescence; H3663) from Millipore-Sigma, mouse anti–glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:10,000; g9295) from Millipore-Sigma, mouse anti-G3BP1 (1:500 for Western blot and 1:200 for immunofluorescence; sc-365338) from Santa Cruz Biotechnology, rabbit anti-G3BP2 (1:2000; ab86135) from Abcam, rabbit anti-TIA1 (1:300; 12133-2-AP) from Proteintech, rabbit anti-CAPRIN1 (1:2000; 15112-1-AP) from Proteintech, rabbit anti-UBAP2L (1:4000; ab70319) from Abcam, mouse anti-actin (1:10,000; A5441) from Millipore-Sigma, mouse anti-tubulin (1:1000; T8328) from Millipore-Sigma, mouse anti-Satb2 (1:100; ab51502) from Abcam, rat anti-Ctip2 (1:200; ab18465) from Abcam, rabbit anti-Tbr1 (1:200; ab31940) from Abcam, rabbit anti-Pax6 (1:200; 901301) from BioLegend, and rabbit anti-Tbr2 (1:200; ab23345) from Abcam.
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