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Sq detector 2 mass spectrometer

Manufactured by Waters Corporation
Sourced in United States

The SQ Detector 2 mass spectrometer is a high-performance analytical instrument designed for precise and sensitive detection of chemical compounds. It utilizes advanced mass spectrometry technology to accurately measure the mass-to-charge ratios of ionized molecules, providing detailed information about the composition and structure of various substances.

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9 protocols using sq detector 2 mass spectrometer

1

Recombinant Protein Purification and Characterization

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Plasmids containing the designed sequences were transformed into E. coli strain BL21(DE3) and expressed. After expression, the cells were harvested and lysed by using ultrasonication. The crude products were obtained using Ni-NTA resin and further purified by using SEC. The purified protein samples were characterized by using SDS–PAGE and SEC. The molecular weights of protein samples were confirmed by using LC–MS with a quadrupole rods SQ Detector 2 mass spectrometer (Waters Corp.). Protein samples were diluted with ddH2O until a final concentration of 0.02 mg/mL for far-UV CD and 0.2 mg/mL for near-UV CD was achieved. The CD spectroscopy was recorded on a MOS-500 spectrometer (Bio-Logic, France).
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2

Purification and Characterization of Organic Compounds

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All the chemicals such as reagents and solvents were purchased from commercial sources and used as received without further purification, unless otherwise noted. Reactions were monitored by analytical thin layer chromatography (TLC), with visualization under UV light (254 nm). Column chromatography (CC) was performed with silica gel (300–400 mesh, Makall Group CO, LTD, Qingdao, Shandong, China). The 1H and 13C NMR spectra were recorded on a Bruker Avance NEO spectrometer (Bruker Co. Ltd, Billerica, Massachusetts, America). Chemical shifts are given in parts per million (ppm), and Tetramethyl silane (TMS) was used as an internal standard. Liquid chromatograph mass spectrometer (LC–MS) was performed using an Acquity UPLC H-Class coupled to a SQ Detector 2 mass spectrometer using a BEH C18 column (1.7 m, 2.1 50 mm, 1 mL/min) (Waters Corporation, Milford, MA, USA) and mobile phase for LC–MS was methanol and water.
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3

Analytical Characterization of Natural Products

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Specific rotations were obtained on a WYA-2S digital Abbe refractometer (Shanghai Physico-optical Instrument Factory, Shanghai, China). UV spectra were determined using a Shimadzu UV-2401 PC spectrophotometer (Shimadzu Corporation, Tokyo, Japan), while CD spectra were measured on a JASCO J-715 spectra polarimeter (Japan Spectroscopic, Tokyo, Japan). 1H, 13C and 2D NMR spectra were recorded on a Bruker AV 400 NMR spectrometer using TMS as an internal standard. High-resolution ESI-MS were performed on an LTQ Orbitrap XL instrument (Thermo Fisher Scientific, Bremen, Germany) using peak matching. TLC and column chromatography (CC) were carried out over silica gel (200–400 mesh, Qingdao Marine Chemical Inc., Qingdao, China), or a Sephadex-LH-20 (18−110 µm, Merck, Darmstadt, Germany), respectively. UPLC analysis (Waters Corporation, Milford, MA, USA) was recorded using a Waters system equipped in ESI mode on an Acquity UPLC H-Class connected to an SQ Detector 2 mass spectrometer using a BEH RP C18 column (2.1 × 50 mm, 1.7 µm, 0.5 mL/min). Semi-preparative HPLC was performed using a Waters equipped with a 2998 PDA detector (Waters Corporation, Milford, MA, USA) and a RP C18 column (YMC-Pack ODS-A, 10 × 250 mm, 5 μm, 3 mL/min).
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4

Spectroscopic Characterization of Compounds

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Ultraviolet
(UV) data were obtained using a Waters 2487 dual λ absorbance
detector. Infrared (IR) spectra were measured on a Nicolet Nexus 470
spectrophotometer using KBr disks. NMR spectra were recorded using
a Varian System 500. The corresponding residual solvent signals (δH/C 2.50/39.5 for DMSO-d6, 7.26/77.2
for CDCl3, or 3.31/49.2 for CD3OD) were used
to reference the chemical shifts in NMR spectra. Furthermore, HRESIMS
spectra were measured using a Q-TOF Ultima Global GAA076 LC mass spectrometer,
and LRESIMS spectra were obtained using a Waters SQ Detector 2 mass
spectrometer. Semipreparative HPLC was performed using a phenyl column
(YMC-pack Ph, 10 mm × 250 mm) or a π-NAP column (COSMOSIL,
10 mm × 250 mm). TLC was performed on plates precoated with silica
gel GF254 (10–40 μm). Column chromatography (CC) was
performed over silica gel (200–300 mesh, Qingdao Marine Chemical
Factory) and Sephadex LH-20 (Amersham Biosciences). Finally, vacuum
liquid chromatography (VLC) was performed using silica gel H (Qingdao
Marine Chemical Factory).
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5

Analytical Characterization of Compounds

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Optical rotations were obtained on a JASCO P-1020 (JASCO Corporation, Tokyo, Japan) digital polarimeter. UV spectra were recorded on Waters 2487 (Waters Corporation, Milford, MA, USA), while the ECD spectrum were recorded on JASCO J-815 spectropolarimeter (JASCO Corporation, Tokyo, Japan). 1H NMR, 13C NMR, DEPT and 2D NMR spectra were recorded on an Agilent 500 MHz DD2 spectrometer (Agilent Technologies Inc., Santa Clara, CA, USA). HRESIMS and ESIMS spectra were obtained using a Thermo Scientific LTQ Orbitrap XL mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA) on positive ionisation mode. Column chromatography (CC) was performed with silica gel (200-300 mesh, Qingdao Marine Chemical Inc., Qingdao, China) and Sephadex LH-20 (Amersham Biosciences, San Francisco, CA, USA). MPLC was performed on a Bona-Agela CHEETAHTM HP100 (Beijing Agela Technologies Co., Ltd., Beijing, China). RP-HPLC was performed on an ODS column (HPLC (YMC-Pack ODS-A, 10 × 250 mm, 5 µm, 3 mL/min)) (YMC Co., Ltd., Kyoto, Japan). LC-MS was performed using an Acquity UPLC H-Class coupled to a SQ Detector 2 mass spectrometer using a BEH C18 column (1.7 μm, 2.1 × 50 mm, 1mL/min) (Waters Corporation, Milford, MA, USA).
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6

Extraction and Identification of Bioactive Compounds

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The ethanol extract of MF was prepared as described previously (Jin et al., 2017 (link)). TSN and Ohchinin (OCN) were purchased from ChemFaces (Wuhan, China) (purity >98%) and used as experimental compounds and standards for ultra-performance liquid chromatography/mass spectrometry (UPLC/MS) (Akihisa et al., 2013 (link)). The components of MF were separated using by a several Waters ACQUITY UPLC H-Class modules (Waters Corporation, Milford, MA, USA) coupled to the SQ detector 2 mass spectrometer (Waters Corporation, Milford, MA, USA) with electrospray ionization (ESI). Chromatographic separation was achieved with a Waters Acquity UPLC BEH C18 octadecylsilane column (2.1 mm × 100 mm, 1.7 µm) and mobile phase (80% B) using 10 mM ammonium acetate in water or acetonitrile. The MS conditions were as follows: ion spray voltage, 3.5 kV; capillary voltage, 20 V; capillary temperature, 350°C; and tube lens voltage, 40 V. Analysis for TSN and OCN was performed in negative and positive mode, respectively (Ong and Ong, 2007 (link)).
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7

Synthesis and Characterization of a Novel Probe

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The probe was designed by the authors and the synthesis was custom made from Serinno Holdings Limited. This probe will be commercially available after this work is disclosed. 1H NMR (500 MHz, CD3CN) δ = 10.48 (1H, s), 10.44 (1H, s), 7.91 (1H, d, J = 7.8 Hz), 7.82 (1H, s), 7.68 (1H, d, J = 7.8 Hz), 6.86 (1H, br s), 6.59 (1H, br s). 13C NMR (100 MHz, CD3CN) δ = 193.3, 192.9, 171.4, 171.1, 146.8, 137.0, 135.2, 134.7, 131.7, 131.7, 80.5, 71.4. Analytical reversed-phase high-performance liquid chromatography (RP-HPLC) separations involving a mobile phase of 0.1% trifluoroacetic acid (TFA) (v/v) in acetonitrile (Solvent A) and 0.1% TFA (v/v) in water (Solvent B) were performed on a Waters UPLC H-class system equipped with an ACQUITY UPLC photodiode array detector and a Waters SQ Detector 2 mass spectrometer using a Waters ACQUITY BEH C18 column (1.7 μm, 130 Å, 2.1 ×50 mm) at a flow rate of 0.4 mL/min. The calculated purity was >95%. ESI–MS (m/z): calculated for C19H22N2O4S2 [M + H]+: 407.53; found [M + H]+: 407.26; [M+Na]+: 429.51; found [M+Na]+: 429.27; [M+Na+H2O]+: 447.52; found [M+Na+H2O]+: 447.30.
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8

Analytical Techniques for Natural Product Characterization

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Specific rotations were obtained on a JASCO P-1020 digital polarimeter developed by JASCO Corporation, Tokyo, Japan. UV spectra were carried out on Waters 2487 developed by Waters Corporation, Milford, MA, USA. NMR spectra were recorded on Agilent 500 MHz DD2 spectrometers made by Agilent Technologies Inc., Santa Clara, CA, USA, using tetramethylsilane as an internal standard, and the chemical shifts were recorded in δ values. HRESIMS spectra were obtained on a LTQ Orbitrap XL mass spectrometer made by Thermo Fisher Scientific, Waltham, MA, USA. The compounds were purified by HPLC made by the Waters company, Milford, MA, USA, equipped with a 2998 PDA detector and a C18 column (YMC-Pack ODS-A, 10 × 250 mm, 5 µm, 3 mL/min). Medium-pressure preparative liquid chromatography (MPLC) was performed on a Bona-Agela CHEETAH HP100 made by Beijing Agela Technologies Co., Ltd., Beijing, China. Column chromatography (CC) was performed with silica gel (100−200 mesh, 200−300 mesh, Qingdao Marine Chemical Inc, Qingdao, China) and Sephadex LH-20 (Amersham Biosciences, San Francisco, CA, USA), respectively. LC-MS was recorded in ESI mode on an Acquity UPLC H-Class connected to a SQ Detector 2 mass spectrometer using a BEH C18 column (1.7 µm, 2.1 × 50 mm, 1 mL per minute) constructed by Waters Corporation, Milford, CT, USA.
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9

Glutathione Adducts Characterization

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1 mM Glutathione(GSH) is reacted with 1 mM HNE in Tris-HCl buffer (pH=7.4) for 1 h at room temperature. The reaction is then adjusted to pH 5.0 and added with 5 mM AOyne for another 30 min. The reaction solutions are filtered through a 0.22 µm membrane. The samples are analyzed on an ACQUITY H-Class ultra performance liquid chromatography-electrospray ionization-mass spectrometry (UPLC-ESI-MS) system (Waters Corp.) with a peptide BEH C18 column (Waters 300, 1.7 2.1 100 mm) and a quadrupole rods SQ Detector 2 mass spectrometer (Waters Corp.) The ultra-pure water and acetonitrile are used as the mobile phase in a 7 min gradient and the ion chromatographic traces are extracted at m/z 306 for GSH, 462 for GSH-HNE, 557 for GSH-HNE-OAyne, and 572 for GSH-HNE-HZyne.
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