The largest database of trusted experimental protocols

Bodipy 665 676

Manufactured by Thermo Fisher Scientific
Sourced in United States

BODIPY 665/676 is a fluorescent dye. It has excitation and emission wavelengths of 665 nm and 676 nm, respectively. The dye is suitable for use in a variety of fluorescence-based applications.

Automatically generated - may contain errors

14 protocols using bodipy 665 676

1

Fluorescent Lipid Imaging Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated as indicated; then, 50 μM BODIPY™ 665/676 (Thermo Fisher Scientific, USA) was added to the cells, which were incubated for 1 h. Excess BODIPY™ 665/676 was removed by washing the cells twice with PBS. Representative images were obtained using a confocal microscope.
+ Open protocol
+ Expand
2

Quantifying Apoptosis in 4T1 Breast Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
4T1 cells were seeded in confocal cell culture dishes at a density of 1 × 104 cells per dish. After culture in incubator for 12 h, HSN (final concentration: [pTBCB] = 50 µg mL−1), HSN with DEVD (100 µM), HSN with DFO (100 µM), and PBS were, respectively, added to the cells. After incubation for 24 h, cells were gently washed three times with fresh PBS and then fixed with 4% paraformaldehyde. After fixation, cells were incubated with PBS containing 0.1% Triton X-100 (PBST) and then washed three times with ice-cold PBS. Afterwards, cells were incubated with 3% bovine serum albumin (BSA) in PBST for 30 min. Then cells were washed three times in PBS and incubated with primary cleaved caspase-3 antibody (Cell Signaling Technology) (1:1000 in PBST) in a humidified chamber at 4 °C overnight. After incubation, cells were washed three times in PBS and incubated with secondary antibody Alexa Fluor 488 conjugated donkey anti-rabbit IgG (Thermo Fisher Scientific) (1:1000 in PBST) at room temperature for 1 h. Then cells were washed with PBS and sequentially stained with BODIPY 665/676 (Thermo Fisher Scientific) (10 µM, 30 min) and DAPI. After mounted by Fluoromount aqueous mounting medium, cells were imaged under a LSM800 confocal microscope.
+ Open protocol
+ Expand
3

Dye-based Oxidation Sensitivity Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The lipophilic and oxidation-sensitive dye BODIPY 665/676 was purchased from Thermo Fischer (Waltham, MA, USA). l-ascorbic acid, sodium chloride (>99.5%, EMSURE®), and alumina power (Alumina N—Super I) were obtained from Aldrich-Europe (Darmstadt, Germany), MilliporeSigma (Burlington, MA, USA), and MP EcoChrom™ (Eschwege, Germany), respectively. Spirit white vinegar (4%), soybean oil, and egg yolk containing 8% (w/w) NaCl were purchased from a local store. Demineralized (demi) water was used for all experiments.
+ Open protocol
+ Expand
4

Fluorescent Protein Imaging and Antibody Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
BODIPY 493/503, BODIPY 665/676, BODIPY 581/591-C11, cumyl-OOH, anti-CHMP1B antibody (PA5-44773), and Dulbecco’s PBS (DPBS) were purchased from Thermo Fisher Scientific. NBD-C12, anti-ABCD1 antibody (ab197013), anti-PMP70 antibody (ab109448), anti-catalase antibody (ab110292), and anti-RFP antibody (ab124754) were obtained from Abcam. Oleic acid-BSA complex, nocodazole, anti-Spastin antibody (ABN368), anti-ACBD5 antibody (HPA012145), and DEUP were purchased from Sigma-Aldrich. Anti-GAPDH antibody (2118) was purchased from Cell Signaling. Anti-IST1 antibody (GTX101972) was obtained from GeneTex. PFA and glutaraldehyde (GA) were obtained from Electron Microscopy Science. AP20187 (B/B homodimerizer) was purchased from Takara. The recombinant anti-M1 Spastin rabbit monoclonal antibody, clone RM346 (31-1232-00: RevMAb Biosciences USA), was generated using RevMAb Biosciences’ proprietary B cell cloning technology against M1-specific sequences.
+ Open protocol
+ Expand
5

Lipid Droplet Visualization by BODIPY Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
BODIPY 493/503 or BODIPY 665/676 (Molecular Probes, Carlsbad, CA, USA), was diluted in PBS at a concentration of 1 mg/mL. Following fixation with 4 % paraformaldehyde (PFA) for 10 min and staining with 4,6-diamidino-2-phenylindole (DAPI) for identification of nuclei, the samples were washed 3 times in PBS for 10 min and stained with BODIPY. The samples were mounted in VECTASHIELD (Vector Laboratories), covered with glass cover slips, and digital images were obtained with an Olympus Fluoview FV100 confocal laser scanning microscope under epifluorescent optics.
+ Open protocol
+ Expand
6

Lipid Content Evaluation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For evaluation of lipid content, samples were stained with the red fluorescence dye 4,4-difluoro-3,5-bis(4-phenyl-1,3-butadienyl)-4-bora-3a,4a-diaza-s-indacene (BODIPY® 665/676; Molecular Probes) and the hydrophobic dye Nile Red (NR; Sigma-Aldrich).
+ Open protocol
+ Expand
7

Synthesis and Characterization of Paclitaxel-Loaded Polymers

Check if the same lab product or an alternative is used in the 5 most similar protocols
L(-) lactide (Polysciences Inc.) was recrystallized from Toluene before use. 2-Hydroxyethyl methacrylate (HEMA) (Aldrich, 97%) was dried over molecular sieves (4Ǻ) for 24 hours and distilled under negative pressure before use. Toluene (Acros, 99%) and pyridine (Sigma, ≥ 99%) were refluxed over calcium hydride for one hour and distilled prior to use. Methacryloyl chloride (Aldrich, 97%) was distilled prior to use. Stannous octoate (Sigma, 95%), phosphorous pentoxide (Aldrich, 97%), hydroxylamine hydrochloride reagentplus® (Sigma, 99%), chloroform (Certified A.C.S, Fisher Scientific), hydrochloric acid (Aldrich, 37%) were used as received. All other solvents were used as received. Paclitaxel from Taxus brevifolia was obtained from Sigma-Aldrich (St. Louis, MO, USA). All cell media, heat-inactivated fetal bovine serum (FBS), trypsin-EDTA, penicillin-streptomycin were obtained from Invitrogen (Carlsbad, CA, USA). Hoechst® 33342, CellMask™ deep red plasma membrane stain kit, Rhodamine-123 and Bodipy® 665/676 were obtained from Invitrogen. Phosphate-buffered saline (PBS) was from Mediatech (Manassas, VA, USA) and the CellTiter-Glo® Luminescent Cell Viability Assay Kit was obtained from Promega (Madison, WI, USA).
+ Open protocol
+ Expand
8

Detailed Lipid Droplet Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
CIDEC-GFP was generously provided by professor Peng Li (Fudan University, China), BFP-Sec61β was a gift from Gia Voeltz (Addgene plasmid #49,154). Acipimox (A7856), Triascin C (T4540) and antibodies towards CIDEC (HPA020553) were from Sigma. LAMP1 (ab25630), and EHD2 (154,784) from abcam, perilipin-1 pS522 from Vala Sciences, LC3B (2775S), hormone-sensitive lipase (HSL) pS563 (4139S), Caveolin-1 (3267), Rab5 (46,449), Rab11 (5589), and Calnexin (2679) from Cell Signalling Technology. Alexa fluor goat α-rabbit 568(A11036), 647(A21245), α-mouse 568(A11031), 647(A21236) secondary antibodies, Bodipy 493/503 (D3922), Bodipy 558/568 C12 (D3835), Bodipy 665/676 (B3932), and Lysotracker Deep Red (L12492) were from Invitrogen. MitoTracker RED CMXRos (M7512) and Mitotracker Deep Red (M22426) were from ThermoFisher, 10 nm gold secondary antibodies from Electron Microscopy Sciences.
+ Open protocol
+ Expand
9

Colocalization of LPO with Organelles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The colocalization of LPO with organelles was measured using BODIPY 665/676 (Invitrogen, CA, USA) to track LPO and CellLight-GFP-BacMam-2.0 (Invitrogen, CA, USA) to track mitochondria or lysosomes in rat chondrocytes. Briefly, rat chondrocytes were seeded in a 24-well plate and cultured overnight. After being transfected with CellLight-GFP-BacMam-2.0 (2 μL of BacMam reagent per 10,000 cells) for 24 h, the cells were treated with RSL3, 4OHT, ScpI2, colchicine (Macklin, Shanghai, China), DIDS (MCE, NJ, USA), CCCP (MCE, NJ, USA), Mitoquinol (MitoQ, Glpbio, CA, USA) or chloroquine (CQ; Macklin, Shanghai, China). BODIPY 665/676 (20 μM, 30 min) and Hoechst 33258 (10 μg/mL, 10 min) were used for further staining. Images were obtained by a fluorescence microscope (Nikon, Eclipse-Ti) : fluorescence excitation/emission 561⁄600 nm for Oxidized BODIPY, 458⁄520 nm for GFP, and 352⁄461 nm for Hoechst.
+ Open protocol
+ Expand
10

High-Res Microscopy of Organelle Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cells were split as colonies using ReLeSR and seeded in chambered coverglass for high-resolution microscopy (Thermo Scientific, Nunc™ Lab-Tek™ II Chambered Coverglass #1.5, 155379). Transfection was done one-day post-splitting. Approximately 20 min before transfection, media was replaced with Essential 8 (Gibco, A1517001). The transfection mix was prepared in Opti-MEM 1X (Gibco 31985070) with 0.5 μl of Lipofectamine Stem Reagent (Invitrogen, STEM00001), and 500 ng of total DNA divided as follows: 167 ng of pEIF1a::Transposase (gifted by Dr. Michael Ward), and 333 ng of organelle markers: lysosomes [pEIF1a::LAMP1::mTurquoise], mitochondria [pEIF1a::Cox8(1-26)::eGFP], Golgi [pEIF1a::Sit::OxVenus], peroxisomes [pEIF1a::mOrange2::SKL], endoplasmic reticulum [pEIF1a::Sec61β::mApple] (Twist Technologies). The mix was applied dropwise and cells were incubated for four hours before the media was changed back to StemFlex and supplemented with BODIPY™ 665/676 (80 ng) for the staining of lipids (Invitrogen, B3932). Prior to imaging, a media change was performed.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!