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7 protocols using 1 ml syringe

1

RNA Extraction from Cultured Cells

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After 1 week of cultivation in the three different media cells were washed with PBS (GIBCO, Life Technologies), detached with TrypLE® Select (GIBCO, Life Technologies), and centrifuged for 5 minutes at 300 g. Then 350 μl lysis buffer was added to the cell pellet from the Qiagen RNeasy® Mini Kit (QIAGEN Hamburg GmbH, Hamburg, Germany) and a 1 ml syringe (B. Braun Melsungen AG, Melsungen, Germany) was used to mechanically lyse the cells before resuming the Qiagen protocol. Finally, total RNA was eluted with RNase-free water (5 Prime GmbH, Hamburg, Germany). RNA purity and concentration was measured using a NanoDrop® 1000 Spectrophotometer (Thermo Scientific, Waltham, MA, US), and the eluate was stored at –80°C until further analyses. RNA purity was validated by absorbance ratios at 260 nm/280 nm and protein contamination at A260/230. RNA integrity was confirmed by RIN >8 using RNA Nano Chips (Agilent Technologies, Santa Clara, CA, US) for the Agilent 2100 Bioanalyzer.
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2

Heparinized Blood Centrifugation for Plasma Troponin T Assay

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Withdrawn blood was collected in a heparinized 1 ml syringe (B. Braun Melsungen AG, Melsungen, Germany). Within 15 min thereafter, the blood was centrifuged at 10.000g for 15 min at room temperature. Plasma was collected and frozen at − 80 °C until analysis. High-sensitivity troponin T assays (Roche Diagnostics, Basel, Switzerland) were performed by the Central Institute for Clinical Chemistry and Laboratory Diagnostics, University Hospital Düsseldorf, according to the instructions of the manufacturer.
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3

Electrospray Deposition of PEDOT:PSS on Carbon Yarns

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The electrospray
deposition setup consists of a 1 mL syringe (B. Braun) connected to
a metallic point needle with gauge 23 (ITEC), a syringe pump (New
Era Pump Systems, Inc, NE-300), and the CY substrate in a multicoater
machine (LRC multicoater). A nonconductive frame was used to fix the
grounded CY and stretch it fully. In this setup, the needle and syringe
are horizontally aligned with the substrate (as shown in Figure S1). The electrospray deposition parameters
studied were the flow rate between 40 and 80 μL h–1, applied voltage between 12 and 18 kV, needle tip-to-collector distance
between 4 and 10 cm, and deposition times of 5, 10, 20, 30, and 60
min. The deposition time for coating the fibers corresponds to PEDOT:PSS
deposition of one side of the carbon yarns. For total coverage of
the fibers, the deposition is repeated under the same conditions and
in the same time span on the other side of the fibers. This is achieved
by rotating the fiber carrier substrate by 180 degrees and repeating
the deposition in the same conditions. Temperature and relative humidity
inside the deposition chamber were kept constant in value intervals
between 18-25 °C and 42-48%, respectively.
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4

Fabrication of Cellulose Acetate Electrospun Membranes

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A 12% wt cellulose acetate (CA) solution was made by dissolving CA (Sigma-Aldrich, Mn = 61,000 with 40% acetyl groups) in acetone and dimethylacetamide (DMAc) in a 2:1 (wt) proportion. The solution was loaded onto a 1 mL syringe (B. BRAUN) with a 21-gauge needle tip (from ITEC). Previously reported parameters15 (link) were used to produce the electrospun membrane. The process was carried out under controlled environmental conditions, namely at temperature of 22 °C and relative humidity of 40%, approximately. A thermoplastic frame, with 6 cm ×6 cm of dimension, was designed using Autodesk Fusion 360 software and printed in a 3D printer (PRUSA i3) to support the carbon-based wires (inner electrodes) during the electrospinning process (Fig. SI1). For 60 minutes deposition, a CA fibres layer with a thickness of 193 ± 74.9 µm, approximately, was obtained.
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5

Gellan Gum Hydrogel Bioprinting Protocol

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The hydrogel composition (used for hydrogel characteristics, cell-material interaction, and cellular hydrogels) contained 100 mg GG (Gelzan, Sigma Aldrich, Taufkirchen, Germany) in 9 mL double distilled water and 1 mL mesenchymal stem cell growth medium (MSCGMx, PeloBiotech). Additionally, the bioink composition (used for bioprinting experiments) contained 100 mg GG in 7.5 mL double distilled water, 1.5 mL MSCGMx, and 1 mL PBS+.
For both, GG was dissolved in double distilled water in the microwave by heating the liquid several times, stirring at a vortexer and heating again until a clear solution was obtained. Afterward, the solution was tempered at 37 °C, and the additional liquids (MSCGMx or MSCGMx and PBS+ with or without cells) were carefully added by pipetting up and down while stirring simultaneously. A measure of 100 µL of the resulting hydrogel-like solution were transferred into a mold (8 mm diameter, 3 mm height) within a 24-well plate (Greiner BioOne) using a 1 mL syringe (B.Braun). Finally, for crosslinking the unstable hydrogel-like solution, the molds were rinsed with 750 µL cell culture medium and placed into an incubator (Thermo Fisher Scientific) under standard conditions (37 °C and 5% CO2).
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6

Blood sample collection and analysis

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Each sample was collected in a 1 ml syringe (B. Braun Medical SA, Emmenbrücke, Switzerland) through a 12-cm-long catheter (needle and adaptor: LUER Lock 0.4 × 12 mm, silicone tubing 0.6 mm OD) and processed without delay. The blood was transferred into two (sample plus spare) heparinized capillary tubes (115 µl; AVL, Roche Diagnostics, Switzerland), hermetically closed with two capillary caps, mixed using a magnetic stick, labelled, kept in a thermostable obscure box and transferred to the nearby laboratory of the cantonal hospital of Fribourg for blood gas analysis within 15 min (Radiometer ABL 700, Diamond Diagnostics, MA, USA).
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7

Hippocampal Slice Culture in Microfluidic Chip

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Two hippocampal slices were placed over the membrane in each chip. For a proper chip sealing, the PDMS block underside was previously exposed to a plasma activation, and subsequently, it was attached to the upper vinyl layer. Immediately, the lower microfluidic chamber was filled to have fresh medium using a micropipette to avoid the slice dehumidification, and in addition, inlet and outlet tubings were fitted into the PDMS perforations. Next, a 1 mL syringe (B. Braun, Melsungen, Germany) was charged with cell culture medium DMEM-high glucose, 20% Horse Serum heat-inactivated and 1% antibiotic and antimycotic solution (Thermo Fisher Scientific, Madrid, Spain) and connected to the chip by the inlet tubing. This syringe was positioned into a perfusion pump with a 1 µL/min flow rate being this flow perfused only through the lower microfluidic chamber. A CO2 incubator (37 °C, 5% CO2) was employed to preserve the microfluidic platform in equal temperature, humidity, and CO2 atmosphere conditions for 10 days.
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