The largest database of trusted experimental protocols

7 protocols using tcrαβ

1

Multiparameter Flow Cytometry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibody clones were used for flow cytometry: from BD: CD3 (Clone SK7), CD8 (Clone RPA-T8), CD45 (Clone HI30), TCRαβ (Clone T10B9.1A-31), CD45RA (HI100), PD1 (Clone EH12.2H7), CD69 (Clone FN50), and CD25 (Clone 2A3); from Biolegend: CD4 (Clone OKT4), TCRαβ (Clone IP26), CCR7 (Clone G043H7), nd aCD62L (Clone DREG-56). Fc receptor-binding inhibitor (Thermo Fisher) was routinely used for staining. Whole-blood samples were stained and lysed using BD FACS lysing solution. CountBright absolute counting beads (Thermo Fisher) were added for measuring cell numbers. Flow data were acquired on a BD LSRII or BD FACSymphony flow cytometer. Data were analyzed using FlowJo version 10.
+ Open protocol
+ Expand
2

Isolation and Sorting of Innate Lymphoid Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For further purification, MNCs from freshly resected patient tissue specimens were subjected to Ficoll‐Hypaque gradient centrifugation for 30 min at 24°C. Next, the MNC layer was transferred to a new tube, washed twice with phosphate-buffered saline (PBS), and suspended in PBS. ILCs were sorted using a BD FACSAria system (BD Bioscience) as Lin-enriched MNCs as Lin cocktail (CD3, CD19, CD20, and CD14), CD94 CD34 CD1a TCRα/β TCRγ/δ CD45+ CD127+ CRTH2+/− CD117+/− cells using FITC anti-Lin (643510; BD Bioscience), CD94 (305504; Biolegend, San Diego, CA, USA), CD34 (343504; Biolegend), CD1a (300104; Biolegend), T cell receptor (TCR)α/β (306706; Biolegend), TCRγ/δ (331208; Biolegend), allophycocyanin (APC)-H7 anti-CD45 (56017; Biolegend), Percp-cy5.5 anti-CD127 (351322; Biolegend), phycoerythrin (PE)-Cy7 anti-CRTH2 (350118; Biolegend), and BV605 anti-CD117 (562687; Biolegend). pDCs were sorted as Lin CD94 CD34 CD1a TCRα/β TCRγ/δ CD45+ BDCA2+ cells using FITC anti-Lin, CD94, CD34, CD1a, TCRα/β, TCRγ/δ, APC-H7 anti-CD45, and APC anti-BDCA2 (17-9818-42; Biolegend). Purity was routinely >99%. Cell viability was determined by trypan blue staining and was >99% after isolation.
+ Open protocol
+ Expand
3

Multiparameter Flow Cytometry Immunophenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells resuspended in FACS buffer (PBS containing 1% bovine serum albumin [Sigma]) were transferred to 5 mL round bottom, snap cap tubes (BD®) and stained with the LIVE/DEAD Fixable Aqua Dead Cell Stain kit (Life Technologies®, Grand Island, NY, USA). Cells were washed with FACS wash (PBS containing 1% bovine serum albumin [Sigma]) and stained with the antibody panel for phenotyping (CD45, CD3, CD4, CD8, CD195, TCR GD2, TCR GD1, TCR αβ, all from Biolegend, BD Pharmingen and Thermo Scientific). Cells were washed again with FACS buffer, resuspended in 300 mL 1% paraformaldehyde. Antibody panel optimization and titrations were performed in cells isolated from cytobrushes. Compensation controls were prepared simultaneously with sample processing, using UltraComp eBeads, (eBioscience®) for antibodies and ArC Amine Reactive Compensation Beads (Life Technologies®) for the viability stain. Samples were acquired on Fortessa flow cytometer (BD®), equipped with 405 nm, 488 nm, and 635 nm lasers. Forward and side scatter voltages were normalized using Trucount beads and fluorescence parameter PMTs were normalized by use of Rainbow Calibration Particles, Peak 7 (Spherotech®, Lake Forest, IL, USA).
+ Open protocol
+ Expand
4

Characterization of GD2.CAR T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Approximately 500,000 cells were washed once with FACS buffer [PBS (Sigma, P3813) containing 1% fetal bovine serum], pelleted, and antibodies were added in appropriate amounts. After incubation for 20 min at 4°C in the dark, the cells were washed with FACS buffer. The GD2.CAR was detected with the 1A7 idiotypic antibody (19 (link)) followed by PE-conjugated rat anti-mouse IgG. The cells were stained with CD25, CD3, CD4, CD8, CD45RA, CD45RO, CCR7, CD62L, TCR γ/δ, CD56, CD28, PD-1, LAG-3, and CD95 monoclonal antibodies (Becton Dickinson, Franklin Lakes, NJ) TCR α/β (Biolegend, #306718) for phenotyping, and with Pro5® CLG Pentamer (ProImmune Ltd., Oxford, UK) for EBV A*02:01 LMP-2 (426–434) specific T cells. To stain for apoptosis, 100,000 cells were removed from culture, resuspended in 1X binding buffer (Becton Dickinson BD) with 5 μL of annexin V (Becton Dickinson BD,) and 4 μL of 7-AAD (Becton Dickinson BD,), and incubated at room temperature for 15 min. The cells were then immediately assessed after incubation without a washing step.
+ Open protocol
+ Expand
5

Characterization of Anti-PD-L1 and Anti-CD19 scFv T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For detecting the anti-PD-L1 scFv, a PD-L1-Fc Fusion protein was used (Sino Biological). For detecting the anti-CD19 scFv, a monoclonal anti-FMC63 antibody was used (Acro Biosystems). For T cell phenotype characterization, the following antibodies were used: mouse anti-human CD3 (clone: UCHT1), TCRαβ (clone: IP26), CD4 (clone: RPA-T4), CD8 (clone: RPA-T8), CD45RA (clone: HI100), CD62L (clone: DREG-56), CCR7 (clone: G043H7) from BioLegend. To evaluate cytotoxicity, Live/Dead Fixable Yellow (Thermo Fisher Scientific) and Annexin V (BioLegend) were used to stain the effector and tumor cells in the co-culture. To examine the degranulation, CD107a (BioLegend) and Granzyme B (BD) were used in the assay. FACS data were acquired on Attune (Thermo Fisher Scientific) and analyzed with Attune software.
+ Open protocol
+ Expand
6

Flow Cytometry Analysis of Immune Cell Phenotypes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single-cell suspension from LMCs was prepared, the cellular phenotype was determined by flow cytometry. The following monoclonal antibodies were used: Gr-1, CD11b, Ly6C, F4/80, CD11c, MHC-II, CD2, CD3, TCRαβ, CD4, CD8, α-GalCer mouse CD1d complex (L363), NK1.1 (PK136), FoxP3 and CD25 (Biolegend). Briefly, LMCs were suspended in PBA and stained with antibody cocktail from 30 min at 4 °C and washed with PBA. To determine the intracellular expression of FoxP3, LMCs were fixed (fixation buffer; Biolegend) and permeabilized (Perm/Wash buffer; BD Pharmingen, San José, CA, USA). After permeabilization, cells were washed twice and then stained with anti-human perforin mAb. Cells were washed and resuspended in 1% paraformaldehyde.
The percentage of RAW macrophages expressing CD3 and transmembrane TNF (tmTNF) was assessed by flow cytometry, following the same protocol to LMC’ cellular phenotype.
Fluorochrome-labeled isotype-matched control antibody was used to evaluate background staining. After incubation with antibodies, cells were washed twice in PBA and data collected using a FACs CyAn and analyzed with FlowJo software. 100,000 events were acquired per sample.
+ Open protocol
+ Expand
7

Multiparametric Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
We purchased the following materials: recombinant human IL-4, recombinant human IL-21, recombinant human IL-33 (FUJI FILM, Osaka, Japan), recombinant human IL-35 (Chimerigen, San Diego, CA, USA), and recombinant human CD40L (BioLegend, San Diego, CA, USA). For flow cytometry, we purchased the following anti-human mAbs: Pacific blue anti-human CD4, PE anti-ST2/IL-1 R4 (R&D systems, Minneapolis, MN, USA) and anti-CD127 (BioLegend), FITC anti-human CD3, CD11b, CD11c, CD14, CD16, CD19, CD20, CD45, CD56, CD123, CD127, TCRαβ, TCRγδ (BioLegend) and FceR1α (eBioscience, San Diego, CA, USA), PE-Cy7 anti-human CD45 (BioLegend), and isotype-matched control IgG (BioLegend).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!