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12 protocols using edta microtainer tube

1

Plasma Cytokine Quantification in Rats

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Rats were anesthetized and bled into pre-chilled EDTA-microtainer tubes (Becton­Dickinson). The blood samples were processed to plasma which was stored in labeled 1.5-ml Eppendorf tubes at -80°C. Plasma samples were thawed to room temperature and assayed by ELISA for IL-6, IL-β and TNF-α (R&D Systems).
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2

Blood Collection and Preservation for RNA and DNA

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350–400 μL of capillary blood was collected into EDTA microtainer tubes (Becton Dickinson, New Jersey, United States) by finger prick. For RNA preservation, 100 μL of whole blood was transferred to a tube containing 500 μL of RNAlater (Sigma-Aldrich, Missouri, United States) within 2 h of collection and stored at − 80 °C until RNA extraction [39 , 40 (link)]. The remaining blood was centrifuged, plasma removed and stored at − 20 °C. The red cell pellet was stored at − 20 °C until DNA extraction.
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3

Murine Pulmonary Fibrosis Model by Bleomycin

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Female C57BL/6J mice (6–8 weeks old) were purchased from the National Laboratory Animal Center, Taipei, Taiwan. The murine pulmonary fibrosis model was established by delivering bleomycin solution to the lungs of mice with a MicroSprayer aerosolizer (IA-1C; Penn-Century, PA, USA) inserted into the trachea. Briefly, mice received a single dose of bleomycin (Bleocin, Nippon Kayaku, Japan) in 50 μl of sterile phosphate-buffered saline (PBS) by intratracheal spray under anesthetization. At day 7 after intratracheal spraying, the mice were randomized into three groups without blinding to receive vehicle, 60 mg/kg nintedanib, or 50 mg/kg SC-43 via oral gavage until the end of the experiment. Blood samples were obtained by cardiac puncture in EDTA microtainer tubes (BD Biosciences, NJ, USA) and sent to the National Laboratory Animal Center for complete blood count. The lungs were lavaged twice with 1 ml cold sterile saline through a plastic cannula. The bronchoalveolar lavage fluid (BALF) was centrifuged at 300 × g, 4 °C for 5 min. The cell pellets were resuspended in the cell staining buffer (2% FBS and 0.02% NaN3 in PBS) for flow cytometry analysis. All experimental procedures using these mice were performed according to protocols approved by the Institutional Laboratory Animal Care and Use Committee of Cardinal Tien Hospital (IACUC-108A-001 and IACUC-110C-005).
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4

Murine Blood Collection and Plasma Isolation

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Approximately 500 μl of blood was collected from each mouse via cardiac puncture and added to a tube containing 15 μl of 0.5 M EDTA for a final concentration of 16 μM EDTA. Warmed ammonium-chloride-potassium (ACK) lysis buffer (10 ml) was added to blood, incubated for 5 min, then neutralized with 20 ml of warmed PBS. Cells were pelleted at 400 × g for 10 min, and supernatant was aspirated. Cell pellet was resuspended in 5 ml ACK lysis buffer, incubated for 5 min, neutralized with 20 ml PBS, and pelleted as described. Isolated cells were then counted and stained for flow cytometry.
To isolate plasma, whole blood in 16 μM EDTA was centrifuged for 10 min at 1500 × g. The plasma layer was carefully removed from the RBC layer and stored at −80°C.
For CBC, 200 μl of whole blood was collected and added to EDTA Microtainer tubes (BD Biosciences, San Jose, CA). Samples were submitted to the University of Michigan In Vivo Animal Core for analysis.
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5

Newborn Telomere Length Measurement

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Newborn Telomere Length. Neonatal DNA was isolated from whole blood obtained by heel stick and collected from the newborns within the first 4 weeks (n=98) after delivery using EDTA microtainer tubes (BD, Franklin Lakes, NJ). After plasma separation the buffy coat was removed and blood cell pellets were stored at −80°C until DNA extraction procedure. Genomic DNA was extracted from the blood cell pellets using Gentra Puregene Blood Kit (Qiagen Inc., Valencia, CA) according to the manufacturer recommended protocol. The DNA concentration was determined by optical density at 260nm and DNA purity was assessed using OD260/OD280 ratio. Measurement of relative LTL (telomere repeat copy number to single gene copy number [T/S ratio]) using quantitative polymerase chain reaction (qPCR) was performed as previously described (Cawthon, 2002 (link); Lin et al., 2010 (link)). The qPCR LTL inter-assay coefficient of variation (CV) was 4.1%. The mean LTL at birth from whole blood as measured by the T/S-Ratio was 1.485 and ranged from .735 to 2.385. All samples were measured in one batch.
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6

Blood Sample Collection and Analysis

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Blood (200 μl) was drawn from the lateral tail vein into serum separator (SST) and ethylenediaminetetraacetic acid (EDTA) microtainer tubes (BD Bioscience, USA), as previously reported [23 (link)]. Haematological parameters were measured using the AcT 5 diff haemo-analyser (Beckman Coulter, Brea, California, United States).
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7

Comprehensive Immune Cell Profiling

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Peripheral blood was collected by facial vein bleed into EDTA Microtainer tubes (BD Biosciences, NJ) and CBC performed on a Heska Hematrue (Heska, CO). Flow cytometry was acquired on a FACSVerse (BD Biosciences, NJ) and analyzed using Flowjo (Flowjo, OR). Cell sorting was performed on an Astrios (Beckman Coulter). Antibodies were used from (1) BioXCell: Fc block (2.4G2), and (2) eBioscience: B220-APC-Cy7 (RA3–6B2), CD11c-APC (N418), CD138-PE-Cy7 (DL-101), CD19-APC (1D3), CD19-PE-Cy7 (1D3), CD21-FITC (4E3), CD23-PE (B3B4), CD25-APC (PC61.5), CD3-FITC (145–2C11), CD4-PE-Cy7 (RM4–5), CD43-APC (R2/60), CD44-PE (IM7), CD45.1-PE (A20), CD45.2-APC (104), CD5-APC (53–7.3), CD62L-APC (MEL-14), CD8-APC-Cy7 (53–6.7), CD8-FITC (53–6.7), Foxp3-PE (FJK-16s), IFNγ-APC (XMG1.2), IgD-FITC (11–26c), IgM-PE (eB121–15F9), IL-17-APC (eBio1787), NK1.1-PB (PK136). Cell viability assessed using fixable Live/Dead Aqua dye (Invitrogen). Flow cytometry for LC3 was performed per manufacturer’s instructions (FlowCellect, Millipore).
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8

Murine Blood Collection and Plasma Isolation

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Approximately 500 μl of blood was collected from each mouse via cardiac puncture and added to a tube containing 15 μl of 0.5 M EDTA for a final concentration of 16 μM EDTA. Warmed ammonium-chloride-potassium (ACK) lysis buffer (10 ml) was added to blood, incubated for 5 min, then neutralized with 20 ml of warmed PBS. Cells were pelleted at 400 × g for 10 min, and supernatant was aspirated. Cell pellet was resuspended in 5 ml ACK lysis buffer, incubated for 5 min, neutralized with 20 ml PBS, and pelleted as described. Isolated cells were then counted and stained for flow cytometry.
To isolate plasma, whole blood in 16 μM EDTA was centrifuged for 10 min at 1500 × g. The plasma layer was carefully removed from the RBC layer and stored at −80°C.
For CBC, 200 μl of whole blood was collected and added to EDTA Microtainer tubes (BD Biosciences, San Jose, CA). Samples were submitted to the University of Michigan In Vivo Animal Core for analysis.
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9

Placental Sampling and Newborn Evaluation

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At delivery, cord blood (5 mL) was collected, after clamping the umbilical cord, into a K2-EDTA tube (Becton Dickinson, England) for determination of haemoglobin (Hb) concentration and malaria parasitaemia by microscopy. A placental biopsy (approximately 2.5 cm3) was taken from the maternal side of the placenta within 1 hour of placental expulsion and placed in a prelabelled bottle containing 50 mL of 10% neutral buffered formalin. Incisions were also made on the maternal side of the placenta and 0.5 mL of placental blood collected, using a Pasteur pipette, into an EDTA Microtainer tube (Becton Dickinson, England). A capillary blood sample (0.2 mL) was collected from the mother prior to delivery for malaria microscopy. All biological samples were transported in a cold box to the nearest clinical laboratory (Kintampo Health Research Centre, Navrongo Health Research Centre or Shai-Osudoku District Hospital) for processing. New-borns were weighed on a calibrated digital scale (Jactermac, Germany) to the nearest 0.1 kg within 24 hours of birth. Screening for congenital abnormalities was performed by 2 midwives using clinical examination.
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10

Comprehensive Malaria Evaluation Protocol

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A general physical examination was done by study physicians during enrolment. Baseline data, including demography, axillary temperature and anthropometric measures were recorded. At each visit, a symptom questionnaire and adverse or serious adverse events were recorded. At recruitment and during the scheduled follow up days, finger prick blood samples (300 µL) were collected using EDTA-microtainer tube (Becton Dickinson) for malaria diagnosis using RDT and thick and thin blood films, to prepare dried blood spots (DBS) on Whatman™ 3MM (VWR®) filter paper and measure haemoglobin (Hb) (days 0, 3, 14, 28, and 42) using portable spectrophotometer (Hemocue Hb 301+, Anglom, Sweden). Hillmen urine test was performed on days 1, 2, 3, 7, and 14 as per the national guideline [9 ] with slight modification. All female study participants aged 12 years and above were tested for pregnancy and pregnant women were excluded from the study.
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