The largest database of trusted experimental protocols

3 protocols using poly da dt naked

1

Characterizing cGAS-mediated Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Poly(dA:dT) naked, Poly(dG:dC) naked, 2’3’-cGAMP, and HSV-60 naked were acquired from Invivogen. Lipofectamine 3000 transfection kit (Invitrogen); jetPRIME transfection reagent (Polyplus-transfection); dual-luciferase reporter assay system (Promega); digitonin (Sigma); streptavidin agarose (Solarbio); hydroxylamine solution (HAM, Sigma-Aldrich); EZ-Link BMCC-Biotin (ThermoFisher). The commercial antibodies used in this study included rabbit FLAG mAb (#14793), mouse FLAG mAb (#8146), mouse His mAb (#2366), rabbit TBK1/NAK mAb (#3504), rabbit phosphorylated-TBK1/NAK (p-TBK1) mAb (#3504), mouse IRF3 mAb (#10949), rabbit IRF3 mAb (#4302), rabbit p-IRF3 (Ser 396) mAb (#4947), mouse IκBα mAb (#4814), and rabbit p-IκBα (Ser 32) mAb (#2859). Streptavidin-HRP antibody (#3999) were acquired from Cell Signaling Technology (Boston, MA, USA). The rabbit cGAS pAb (HA500023) was obtained from HuaAn Biotechnology (Hangzhou, Zhejiang, China). The rabbit p-IRF3 (Ser 396) mAb (SAB4504031), rabbit HA mAb (H6908), and mouse β-actin mAb (A1978) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
+ Open protocol
+ Expand
2

HMGB1-Mediated Inflammasome Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant HMGB1 protein was kindly provided by Dr. Kevin J. Tracey.
Ultrapure LPS (E. coli 111:B4, tlrl-3pelps), nigericin (tlrl-nig), ATP (tlrl-atp), MSU crystals (tlrl-msu), nano-SiO2 (tlrl-sio), FLA-ST (flagellin from Salmonella typhimurium) (Cat No. tlrl-stfla), and poly (dA:dT) naked (Cat No. tlrl-patn) were purchased from InvivoGen. Lipofectamine 3000 Transfection Reagent (Cat No. L3000015) was obtained from Thermo Fisher (Waltham, MA, United States). Digitonin (D141) was obtained from Sigma.
Antibodies were as follows: caspase-11 (Novus Biologicals, NB120), GSDMD (Abcam, ab209845), IL-1α (Abcam, ab7632), caspase-1 (Abcam, ab179515), IL-1β (R&D System, AF-401-NA), human GSDMD (Abcam, ab210070), cleaved N-terminal GSDMD (ab215203), IL-1α (Abcam, ab206410), IL-1β (Abcam, ab216995), caspase-4 (MBL International, M029-3), LAMP1 (eBioscience, 14-1071-85), Na+/K+ ATPase (Novus Biologicals, NB300-146), Rab7 (Cell Signaling Technology, Inc., #9367S), E. coli LPS antibodies (Abcam, ab35654), and β-actin (Cell Signaling Technology, Inc., #3700s).
+ Open protocol
+ Expand
3

Oxidative Stress and DNA Provocation Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
For oxidative stress, hydrogen peroxide (H2O2) solution (30%) (Fujifilm Wako, 084‐07441) was diluted 1000‐fold with the culture medium and added to both the apex and bottom of the ALI. Cells were preincubated for 1 h with Mito‐TEMPO (Hydorate, Cayman Chemical 16621) or 2 h with the STING inhibitor, H‐151 (InvivoGen inh‐h151) and then stimulated with H2O2.
For intracellular DNA provocation, NCI‐H292 cells were transfected with 0.5 μg of poly(dA:dT) naked (Invivogen, tlrl‐patn) using the FuGENE HD Transfection Reagent (Promega, E2311) and incubated for 24 h. 2′3′ cGAMP (InvivoGen, tlrl‐cga23‐s) was dissolved in double‐distilled water at 1 mg/mL and stored at −20°C until use. Cells were stimulated with 2′3′ cGAMP for 16 h. MitoTEMPO (Cayman Chemical, 16621) was preadministered to cells 1 h before H2O2 stimulation. Thapsigargin (Cayman Chemical, 10522) was dissolved in dimethyl sulfoxide at 1 mM and stored at −20°C until use. Thapsigargin, which can trigger mitochondrial DNA release into the cytosol,13 was diluted with culture medium to appropriate concentrations, incubated for 4 h, and further cultured in serum‐free RPMI‐1640 for 20 h. Cells were incubated with a medium containing recombinant human transforming growth factor‐alpha (TGF‐α; R&D 239‐A‐100), an EGF receptor (EGFR) agonist for 6 h.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!