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3 protocols using proliferating cell nuclear antigen (pcna)

1

Immunohistochemical Analysis of Mouse Lungs

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Mouse lungs were inflated and fixed in 2% paraformaldehyde, dehydrated in a series of increasing ethanol concentration washes, embedded in paraffin and sectioned. Antibodies used were anti-SM22α (goat anti-SM22α 1:200 Abcam), GFP (goat anti-GFP 1:100 Abcam, rabbit anti-GFP 1:100 Molecular Probe), Scgb1a1 (goat anti-Scgb1a1 1:20 Santa Cruz), SPC (rabbit-anti SPC 1:500 Chemicon), Pdgfrα (rabbit anti-Pdgfrα 1:50 Cell Signaling), Pdgfrβ (rabbit anti-Pdgfrβ 1:100 Cell Signaling), vimentin (rabbit anti-vimentin 1:100 Santa Crux), collagen type1 (rabbit anti-Col1 1:500 Abcam), Ki67 (rabbit anti-Ki67 1:50 Abcam), PCNA (mouse anti-PCNA 1:50 Biocare), PO4-Histone H3 (mouse anti-PO4-Histone H3 1:200 Cell Signaling), TubbIV (mouse anti-TubbIV 1:20 Biogenex), S100A4 (rabbit anti-S100A4 1:200 Abcam). LacZ staining of lungs was performed as previously described8 (link). The slide was imaged on a Zeiss LSM 710 confocal microscope and analyzed in ImageJ software.
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2

Immunohistochemical Analysis of DNA Repair Proteins

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Pathology cases were selected from University of Kansas archives and formalin-fixed, paraffin embedded tissue blocks containing the most representative areas were selected for IHC. The following IHC antibodies were used: RAD6, RAD18, RPA70 (Abcam), and PCNA (Epitomics, Burlingame, CA, USA). Procedures were performed at room temperature using the Biocare IntelliPath autostainer. Epitope retrieval was by Biocare Borg Decloaker (BRCA-1) and citrate with pH 6 (PCNA, RAD6, RAD18, RPA70). Titers used were 1:500 (BRCA-1), 1:600 (PCNA), 1:3000 (RAD6), 1:300 (RAD18), and 1:800 (RPA70), with an incubation of 30 min for all antibodies. Detection was with Dako Evision FLEX HRP (BRCA-1), Biocare Mach 2 Rabbit HRP-polymer (PCNA, RAD6, RPA70), and Dako Envision+ LP, Mouse (RAD18). Slides were counterstained with hematoxylin and permanently mounted. Whole slide images were then analyzed by digital image analysis using Aperio (Leica Biosystems), and results were documented as an expression score incorporating both total percent positivity and intensity of staining [(percent positivity x staining intensity)/100]. Statistical analysis (one-way ANOVA and Tukey-Kramer test) was performed using Microsoft Excel with Real Statistics Resource pack and an alpha level of 0.05.
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3

Immunohistochemical Analysis of Mouse Lungs

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Mouse lungs were inflated and fixed in 2% paraformaldehyde, dehydrated in a series of increasing ethanol concentration washes, embedded in paraffin and sectioned. Antibodies used were anti-SM22α (goat anti-SM22α 1:200 Abcam), GFP (goat anti-GFP 1:100 Abcam, rabbit anti-GFP 1:100 Molecular Probe), Scgb1a1 (goat anti-Scgb1a1 1:20 Santa Cruz), SPC (rabbit-anti SPC 1:500 Chemicon), Pdgfrα (rabbit anti-Pdgfrα 1:50 Cell Signaling), Pdgfrβ (rabbit anti-Pdgfrβ 1:100 Cell Signaling), vimentin (rabbit anti-vimentin 1:100 Santa Crux), collagen type1 (rabbit anti-Col1 1:500 Abcam), Ki67 (rabbit anti-Ki67 1:50 Abcam), PCNA (mouse anti-PCNA 1:50 Biocare), PO4-Histone H3 (mouse anti-PO4-Histone H3 1:200 Cell Signaling), TubbIV (mouse anti-TubbIV 1:20 Biogenex), S100A4 (rabbit anti-S100A4 1:200 Abcam). LacZ staining of lungs was performed as previously described8 (link). The slide was imaged on a Zeiss LSM 710 confocal microscope and analyzed in ImageJ software.
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