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6 protocols using evos fl auto 2 fluorescent microscope

1

Cell Adhesion Assay with Collagen and Matrigel

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Collagen (Rat Tail Type I, Corning; 50 μg/ml) or Matrigel (BD Biosciences, 1:2 dilution) was incubated in a 24-well plate and allowed to coat the surface for 1 h at 37 °C. 1×103 cells were seeded in each well. Cells were allowed to adhere for different times (30 min to 2 h) at 37 °C. Cells were then washed with PBS, before fixing with 4% paraformaldehyde (PFA/PBS) for 10 min. After washing with PBS, cells were stained via incubation with DAPI and Alexa-Fluor 488 Phalloidin for 30 min. Cells were finally washed with PBS. Fluorescent images were acquired on an Evos FL Auto 2 fluorescent microscope (Thermofisher). Tile scans were obtained using a 4× air objective using identical camera acquisition times. Tiles were knit into.TIFF files using FIJI software and total cell count was obtained by thresholding for nuclear stain followed by automated counting.
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2

Immunofluorescence Assay for Proliferation and Cell Cycle Markers

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Keratinocytes were seeded onto coverslips and fixed with 10% formalin. Fixed cells were permeabilized with PBST (0.4% Triton X-100) and subsequently blocked with 2.5% goat serum in PBST. Blocked coverslips were incubated with primary antibody overnight at 4 °C and then at room temperature for 1 hour with secondary antibody goat anti-mouse (Thermo Fisher, #A11005, 1:400) and/or goat anti-rabbit (Thermo Fisher, #A11034, 1:400). Nuclei were stained with NucBlue Fixed Cell Stain (Invitrogen). Imaging was done using an EVOS FL Auto 2 fluorescent microscope (Thermo Fisher). Mouse monoclonal anti-Ki67 (Santa Cruz Biotechnology, sc-23900, 1:50) and rabbit anti-p21 (12D1) (Cell signaling, 2947, 1:200) antibodies were used.
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3

Transwell Migration Assay with HDM-Treated Cells

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16HBE parental, 16HBE CAR CRISPR or 16HBE CAR CRISPR + CAR-GFP (rescued) cells were plated in 24-well plate. After 24 h, HDM was added for 24 h and the supernatant was used to feed the lower chambers as follows. HL60 cells were seeded in 6.5 mm Transwell chambers (Corning, UK) with 8.0 μm pores at 30,000 cells per chamber. Media in the lower chambers was changed to supernatants from 16HBE cells treated or not with HDM as explained above. HL60 cells were allowed to migrate for 6 h. Cells that migrated through the Transwell in 6 h were stained with Cell Tracker Orange Dye (Molecular probes, UK) and fluorescent images were acquired on an Evos FL Auto 2 fluorescent microscope (Invitrogen). Tile scans were obtained using a 4x air objective using identical camera acquisition times. Tiles were knit into.TIFF files using FIJI software and total cell count was obtained by thresholding for nuclear stain followed by automated counting.
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4

Immunostaining of Flag and HA Proteins

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Cells on coverslips were fixed with 4% Paraformaldehyde solution. Then Permeabilization was done with 0.25% Triton X-100 after 3 times washing with PBS. Cells were blocked for 1 h with 1% BSA in PBST (PBS+ 0.1% Tween 20) followed by incubation with anti-flag (Sigma, F1804) and HA (abcam, ab9110) antibodies overnight at 4 degree in a wet box. Cells were washed three times in PBS for 15 min and incubated with respective secondary antibodies (anti-mouse Alexa 488: Invitrogen, A11001; anti-rabbit Alexa 546: Invitrogen, A11035) along with DAPI for 1 h at room temperature. Antifade Mounting Medium (Beyotime, P0131) was used for mounting and image acquisition was done using an invitrogen EVOS FL Auto 2 fluorescent microscope.
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5

Quantifying Neutrophil Extracellular Traps

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NET-production of peripheral blood neutrophils was determined in vitro as previously described [30 (link)]. Briefly, freshly isolated neutrophils were plated on coverslips and treated with 100 nM PMA (phorbol-12-myristate-13-acetate, Sigma Aldrich) in RPMI containing 0.05% human serum albumin (HSA, Gibco® ThermoFisher) or left untreated. After fixation with 2% PFA (paraformaldehyde) at 2 and 4h, the coverslips were washed and permeabilized with 0.5% TritonX-100/PBS for 5 min. Subsequently, cells were incubated for 2h with an anti-chromatin antibody (PL2-3, produced in house), a rabbit-anti-neutrophil-elastase-antibody (Calbiochem, Merck). After washing, goat anti-mouse Alexa568, goat anti-rabbit Alexa488 and Hoechst 3342 (all ThermoFisher) were added and incubated for 1 hour on ice. After several washing steps, immunofluorescence microscopy was performed using the Evos FL Auto 2 fluorescent microscope from Invitrogen. Images were analysed using ImageJ as described before. Briefly using the settings and thresholds described by Brinkmann et al. [30 (link)] the NET-rate was calculated as: NET-rate = 100*Objects counted (chromatin channel)/Objects counted (Hoechst channel).
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6

Immunostaining of Mouse Hippocampus

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Brain sections, 3 per mouse, containing the hippocampus were washed 3 times with PBS, followed by blocking in 5% normal donkey serum (NDS)/5% bovine serum albumin (BSA)/0.1% Triton/PBS solution for 1 h at room temperature while shaking. Sections were incubated overnight at 4 °C in 5% NDS/5% BSA/0.1% Triton/PBS solution with the following dilutions of primary antibodies: rabbit anti-IBA1 (cat #: 019–19741, Wako Chemicals, Richmond, VA, USA, dilution 1:2000), and goat anti-GFAP (cat #: ab53554, Abcam, Cambridge, MA, USA, dilution 1:2000). Next, sections were washed 3 times with PBS followed by incubation in 5% NDS/0.1% Triton/PBS with the following dilutions of secondary fluorescent antibodies: donkey anti-goat Alexa Fluor 488 (cat #: A-11055, Invitrogen, Carlsbad, CA, USA, dilution 1:1000), and donkey anti-rabbit Alexa Fluor 647 (cat #: A-31573, Invitrogen, dilution 1:2000). An additional 3 PBS washes were performed followed by mounting onto glass slides and coverslipping with Fluoromount G + DAPI solution (cat #: 0100–20, SouthernBiotech, Birmingham, AL, USA). Using an EVOS FL Auto 2 fluorescent microscope with an LED light source (Invitrogen), 20x images containing DAPI, GFAP, and IBA1 signals in the dentate gyrus (DG), CA3, and CA1 regions of the hippocampus of each hemisphere were acquired.
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