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E cadherin

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E-cadherin is a cell-cell adhesion molecule that plays a crucial role in maintaining the structural and functional integrity of epithelial tissues. It is a transmembrane protein that mediates homophilic interactions between neighboring cells, contributing to the formation and stability of adherens junctions.

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2 034 protocols using e cadherin

1

Comprehensive Immunohistochemical Profiling

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Primary antibodies used for immunoblotting, co-immunofluorescence (co-IF), and immunohistochemistry: ARID1A/BAF250A (Cell Signaling Technologies, D2A8U), VIMENTIN (Cell Signaling Technologies, D21H3) for co-IF with E-CADHERIN and immunohistochemistry, E-CADHERIN (Cell Signaling Technologies, 4A2), Cytokeratin 19 (Santa Cruz Biotechnologies, A-3), KI-67 (MIB-1) (Dako), Cleaved CASPASE 3 (A175) (Cell Signaling Technologies, 5A1E), HSP90 alpha (Invitrogen, PA3–013), VIMENTIN (Cell Signaling Technologies, 5G3F10) for immunoblotting and co-IF with HSP90. ARID1B/BAF250B (Cell Signaling Technologies, E9J4T), PBRM1/BAF180 (Cell Signaling Technologies, D3F7O), BRM (Cell Signaling Technologies, D9E8B), BRG1 (Cell Signaling Technologies, A52), SMARCC1/BAF155 (Cell Signaling Technologies, D7F8S), SMARCC2/BAF170 (Cell Signaling Technologies, D8O9V), BAF60a (Santa Cruz Biotechnologies, 23), BAF53 (Santa Cruz Biotechnologies, C-7), SMARCB1/BAF47 (Cell Signaling Technologies, D8M1X). Chemical reagents: NVP-AUY-922 (LC Laboratories).
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2

Mechanical Stretch Response of Caco-2 Cells

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Caco-2 cells were cultured to confluence with mature cell-cell junctions on a collagen I coated PDMS-bottom 6-well plate (Flexcell® vacuum-based stretching system). An equiaxial stretching of 10% constant stain was imposed for 5 min on the Caco-2 monolayer. Cells were fixed and stained for endogenous E-cadherin (mAb Rat, clone ECCD-1, Invitrogen; 191900), F-actin (Phalloidin AlexaFluor647, Invitrogen), ZO-1 (mAb mouse, Abcam; ab59720), and occludin (mAb Rabbit, Invitrogen; 6H10L9). Apical junctions of the cells were visualized and imaged by LSM 780 100× confocal microscopy. Imaging for the stretched and the control groups was conducted simultaneously with 3 independent replicative experiments. All experiment conditions were kept consistent.
E-cadherin knockdown in Caco-2 monolayer was verified by immunofluorescent staining, with E-cadherin (mAb Rabbit, Cell Signaling), α-catenin (mAb mouse, Cell Signaling), and β-catenin (mAb mouse, BD). The lysates were also immunoblotted for E-cadherin (mAb Rabbit, Cell Signaling) and GAPDH (glyceraldehyde 3-phosphate dehydrogenase) (loading control; mAb Rabbit, Sigma).
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3

Western Blotting and Immunocytochemistry for Cell-Cell Adhesion

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Western blotting was carried out using 40 μg of whole tissue lysate per lane with the E-cadherin antibody (1:1000, 3195, Cell signalling), β-catenin antibody (1:1000, 9582, Cell signalling), non-phospho active β-catenin antibody (1:1000, 8814S, Cell signalling), GAPDH (1:1000, ab8245, Abcam) and β-actin antibody (1:5000, A5316, Sigma). For the Atmin siRNA-mediated knockdown immunocytochemistry, E-cadherin (1:500, 3195, Cell signalling) was used.
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4

Antibody Characterization for Biomedical Research

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Antibodies used for all the experiments were as follows: for immunoflourescence, β-hCG (ab9582, Abcam), Vimentin (5144 S, Cell signaling technology), E-cadherin (3195 S, Cell signaling technology), P-cadherin (sc-7893, Santa Cruz Biotechnology), BRCA1 (9010 S, Cell signaling technology) primary antibodies were followed by secondary antibodies conjugated with FITC (35552, Cell Signaling Technology). For immunoblotting, Vimentin (5144 S, Cell signaling technology), E-cadherin (3195 S, Cell signaling technology), β-actin (sc-47778, Santa Cruz Biotechnology). For immunoprecipitation: β-hCG (sc-271062, Santa Cruz Biotechnology), TGF beta Receptor II (ab78419, Abcam), normal IgG (sc-2025, Santa Cruz Biotechnology). ChIP: BRCA1 (A301-377 A, Bethyl laboratories). Immunohistochemical analysis: β-hCG (AM305-5M, Biogenex), BRCA1 (AR345-5 R, Biogenex).
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5

Western Blot Analysis of EMT Markers

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Western blot analyses were performed using previously published methods [37 (link)]. The cells were lysed with RIPA lysis buffer and the amount of total protein was quantified using the BCA Protein Assay Kit. Protein samples were loaded onto SDS-PAGE gels and then transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked in PBS-T buffer containing 5% non-fat dry milk and hybridized with primary antibodies. The primary antibodies including the PBX1 antibody (Santa Cruz Biotechnology, CA, USA) [35 (link)], the GAPDH antibody (Proteintech, Rosemont, USA), E-cadherin, N-cadherin, Snail, Vimentin and His-tag antibodies (Cell Signaling Technology, Boston, MA, USA) were utilized according to the manufacturers’ protocols. Finally, membranes were incubated with HRP-conjugated secondary antibody. The protein bands were visualized using enhanced chemiluminescence (ECL). The PathScan EMT Duplex IF Kit (Cell Signaling Technology, Boston, MA, USA) was used to measure EMT marker (E-cadherin and Vimentin [38 (link)]) expression.
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6

Immunofluorescent Analysis of Epithelial-Mesenchymal Transition

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SiHa cells after transfection were cultured on coverslips. Then, the cells were fixed, permeabilized in 0.1% Triton X-100 and blocked in 1% BSA. The coverslips were incubated with primary antibodies against E-cadherin (#3195, Cell Signaling) and N-cadherin (#13116, Cell Signaling) respectively at 4°C overnight. Secondary Anti-Rabbit IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 555 Conjugate) (#4413, Cell Signaling) was used to detect E-cadherin, while Anti-Rabbit IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 488 Conjugate) (#4412, Cell Signaling) was used to detect N-cadherin. The coverslips were incubated with the secondary antibodies for 1 hour at room temperature in the dark. Nuclei were stained using Prolong® Gold Antifade Reagent with DAPI (#8961, Cell Signaling). Immunofluorescent images were obtained using an Olympus IX81 inverse microscope (Tokyo, Japan). Each experiment was performed in triplicate.
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7

Antibody Panel for Protein Analysis

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Antibodies against USP4, Ki67 CD34 and TGFR-1 were purchased from Abcam (Cambridge, UK). Antibodies against E-cadherin, Vimentin, E-cadherin, p-smad2, GFP-Tag, Myc-Tag, K48-linkage specific polyubiquitin were purchased from Cell Signaling Technology (CST, Danvers, MA, USA). Cycloheximide (CHX) was purchased from Abmole (Shanghai, China), MG132 was purchased from MCE (Monmouth Junction, NJ, USA).
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8

Comprehensive Western Blot Analyses

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For western blot, samples were resolved by SDS-PAGE, transferred to nitrocellulose membranes, and blotted with various antibodies; anti-GAPDH (#2118), N-cadherin (#13116), E-cadherin (#3195), Vimentin (#5741), Slug (#9585), Snail-1 (#3879), ZEB1 (#3396), ZO-1 (#8193), phospho-Met (Tyr1349) (#3121), Ron (#4269), pβ-catenin (Thr41 or Ser45) (#9565), β-catenin (#8480), S6 (#2217), total Akt (#9272), phospho-c-Myc (Thr58/Ser62) (#9401), Ki-67 (#9027), phospho-AKT (Ser473) (#9271), phospho-EGFR (Tyr1068) (#11862), LRIG1 (#12752), c-Met (#8198) and antibodies were purchased from Cell Signaling Technology. LRIG1 (G-20) (#sc-50075) and EGFR (#sc-03) antibodies were purchased from Santa Cruz Biotechnology. c-Myc antibody (clone 9E11) (#MS-127-P0) was purchased from Neomarkers. Fibronectin (#GTX112794), CD44 (#GTX102111) and Twist (#GTX127310) were purchased from Genetex (CA, USA). Actin (#A5441) and Tubulin (#T5168) were purchased from Sigma (MO, USA). All antibodies used horseradish peroxidase-conjugated secondary antibodies (Biorad), followed by developing with SuperSignal West chemicals (Pierce). An AlphaInnotech imaging station with FluorChem software was used to capture images. All data are representative of more than three independent experiments.
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9

Anticancer Effects of UDCA in Vitro

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Fetal bovine serum (FBS), Roswell Park Memorial Institute (RPMI) 1640 medium, penicillin-streptomycin, trypsin, and sodium bicarbonate were supplied by Gibco. Dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and UDCA were procured from Sigma Chemicals. Goat anti-rabbit IgG-horseradish peroxidase (HRP, Cat# sc2004) and human EGF were supplied by Santa Cruz Biotechnology. The Western Blot Hyper HRP substrate (Cat# T7103A) was procured from Takara. Gefitinib was procured from Roche Diagnostics. E-cadherin (Cat# 3195), N-cadherin (Cat# 4160), FAK (Cat# 3285), phosphorylated FAK (pFAK, cat# 3283), and β-actin (Cat# 4967) antibodies were purchased from Cell Signaling Technology.
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10

Tissue Staining for Stem Cell Markers

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Lung and liver tissues were collected and fixed for 24 h in formalin and then paraffin embedded and sectioned into slices. Tissue sections were stained with H&E or were immune-stained using the following corresponding antibodies: Sall4 (Abnova, H00057167-M03, 1:800), Nanog (Cell Signaling Technology, #4903, 1:800), N-cadherin (Cell Signaling Technology, #13116, 1:200), E-cadherin (Cell Signaling Technology, #3195, 1:200), and OCT4 (Abcam, ab18976, 1:100).
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