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16 protocols using microtof 2 spectrometer

1

Physicochemical Characterization of Organic Compounds

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Morin hydrate (M4008), semicarbazide (363634), hydroxylamine hydrochloride (159417), and sodium acetate (236500) were acquired from Aldrich. (Sigma Aldrich, Saint Louis, MO, USA), Melting points were determined on a Fisher-Johns apparatus (Thermo Fisher Scientific Inc., Waltham, MA, USA) and were uncorrected. The 1H and 13C NMR spectra were measured at 400 MHz for 1H and at 100 MHz for 13C using a Varian Mercury 400 spectrometer manufactured by Varian, Inc. (Palo Alto, CA, USA) operating at a field of 9.4 Tesla from DMSO-d6 solutions using tetramethylsilane as the internal reference. Chemical shift values were reported in parts per million and coupling constants (J) in Hz. IR spectra were acquired on a Buck 500 spectrophotometer (Buck Scientific, Norwalk, CT, USA). HRMS spectra were acquired on a Bruker MicroTOF-II spectrometer (Bruker Corp., Billerica, MA, USA). Ultraviolet–visible (UV–Vis) spectra were measured on a Perkin Elmer Lambda (PerkinElmer, Inc., Waltham, Massachusetts, USA) spectrometer at 25 °C using EtOH solution. The molar absorption coefficient data (ε = A(λ)/cl) were given in log ε values.
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2

NMR and Mass Spectrometry Analysis

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1H- and 13C-NMR spectra were measured in acetone-d6 on a Varian NMR System 600 MHz (600 MHz for 1H-NMR and 151 MHz for 13C-NMR) instrument; chemical shifts were given in δ (ppm) values, relative to that of the solvent (δH: 2.04; δC: 29.8), on a tetramethylsilane scale. The standard pulse sequences programmed for the instrument were used for each 2D-NMR experiment (1H-1H COSY, HSQC, and HMBC). The JCH value was set at 8 Hz in the HMBC experiment. Mass spectra were obtained on a Bruker MicrOTOF II spectrometer (Bruker, Billerica, MA, USA), using ESI source in a negative-ion mode.
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3

Synthesis of Heterocyclic Compounds

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7,16-Bis[2-(3-bromopropoxy)benzoyl]-5,14-dihydrodibenzo[b,i][1,4,8,11]tetraazacyclotetradecine, 7,16-Bis[2-hydroxybenzoyl]-5,14-dihydrodibenzo[b,i][1,4,8,11]tetraazacyclotetradecine and 9-(6-bromopentyl)adenine were prepared by the procedure described earlier [13 (link)–15 (link)]. All reagents were purchased from commercial sources (Sigma-Aldrich) and were used as received. Solvents were dried by using standard methods and were freshly distilled before use.
1H and 13C NMR were run on Bruker AVANCE II 300 and Bruker AVANCE III 600 spectrometers. Chemical shifts (δ) are expressed in parts per million and J values in hertz. Signal multiplicities are denoted as s (singlet), d (doublet), t (triplet), q (quartet), and m (multiplet). The IR-ATR spectra were recorded with a Thermo Fisher Scientific Nicolet IR200. ESI mass spectra were taken on a Bruker Daltonics microTOF-II spectrometer.
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4

Characterization of Peak 2

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The peak 2 was characterized based on various physicochemical and spectroscopic properties. Appearance, color, odor, and solubility were determined according to the standard procedures. The UV-Visible spectrum was recorded qualitatively on UV-Visible Spectrophotometer (Shimadzu) in the range of 200–400 nm using acetonitrile as reference solvent.1H NMR and 13C NMR spectra were recorded in chloroform-d [99.8 atom% D, containing 0.1% (v/v) tetramethylsilane (TMS)] at 25°C on 500 MHz AVANCE III Bruker spectrometer equipped with a 5 mm double channel solution state probe. The chemical shifts are reported in parts per million (ppm) relative to TMS (δ0.0) used as internal standard. Mass spectrum (HR-MS) was recorded with Bruker MICROTOF II spectrometer. IR spectrum was recorded with Perkin–Elmer FTIR-C92035 Fourier-Transform spectrophotometer in the range 400–4000 cm-1 by using CHCl3 as the medium for the preparation of the samples.
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5

Detailed Analytical Methods for Compound Characterization

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Melting point was measured on a XT4 microscopic melting-point apparatus (Shanghai Jingke Instruments Company, Shanghai, China). Optical rotation was measured with a 241 polarimeter (Perkin-Elmer, Waltham, MA, USA). Electrospray ionization mass spectroscopy (ESIMS) data were recorded with a Micro TOF II spectrometer (Bruker, Bremen, Germany). High-resolution ESIMS data were recorded with an APEX II HR-TOF spectrometer (Bruker). NMR spectra were obtained in DMSO-d6 on a Bruker Avance DRX 400-MHz spectrometer at 400 MHz for 1H-NMR and 100 MHz for 13C-NMR. Precoated silica gel GF254 plates (Merck, Darmstadt, Germany) were used for TLC. For column chromatography, SiO2 (100–200 mesh, Qingdao Marine Chemical Factory, Qingdao, China) and Rp-C18 (ODS-A, 50 μm, YMC, Yantai, China) were used. HPLC purifications were performed on HPLC columns (YMC-Pack Pro C18, 5 μm, 250 mm × 4.6 mm and 250 mm × 10 mm, YMC, Kyoto, Japan) with a L-2000 HPLC system (Hitachi, Tokyo, Japan).
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6

Nitration Reactions in Sapphire Autoclave

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The reactions were carried out in a 22.4 cm3 steel autoclave equipped with sapphire windows, magnetic stirrer, and pressure and temperature sensors. An auxiliary 12 cm3 steel dosing vessel with sapphire windows and a magnetic stirrer was used for the preparation of nitrating agent solutions. Melting points were obtained on Stuart® SMP40. 1H and 13C NMR spectra were recorded on a Bruker® AM-300 (300.13 and 75.47 MHz, respectively). The high-resolution mass spectra (HRMS) were measured on a Bruker microTOF II spectrometer via electrospray ionization (ESI).
TFE, O2 (Grade 3.5), N2 (Grade 5) and N2O4 were obtained from Linde Gas Rus. Unless otherwise mentioned, all substrates were purchased from Acros Organics. Substrates 35 and 38 were prepared via a routine etherification procedure.60 (link) Substrate 39 was synthesized from anisole, oxalyl chloride and methanol (see ESI).
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7

Characterization of Chemical Compounds

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NMR-spectra were acquired on a Bruker Avance III 400 spectrometer using CDCl3 or DMSO-d6 as a solvent. The ESI-MS data were recorded using a Bruker micrOTOF II spectrometer. UV/VIS spectroscopic analysis was performed using an Agilent Cary 60 spectrometer. SEM measurements were performed using a Zeiss FESEM Auriga 40™ Crossbeam and a Hitachi TM3000 Tabletop SEM with a Bruker Quantax EDX Detector for the EDX measurements. EDX line scans were performed at a Zeiss Gemini 500 equipped with an Oxford EDX Ultim Max 100 detector. FT-IR spectra were recorded by using a PerkinElmer Spectrum 100 spectrometer using ATR unit. TGA measurements were measured on a Netzsch STA449 F3 Jupiter. All measurements were performed under oxygen atmosphere with 80 mL min−1 flowrate and a heating rate of 10 K min−1. Fluorescence microscopy was performed at labelled excitation wavelengths using a Zeiss Axio Observer Z1 microscope.
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8

Extraction and Characterization of Bioactive Compounds from Blue Corn and Tortilla

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A 45 × 1.5 cm column was packed with amberlite XAD-7 pre-conditioned with acidified water (5% acetic acid) [17 (link)]. The resin was washed with 200 ml of acidified water (5% acetic acid) and 1 mL of the blue corn or tortilla crude extract was added placed and washed with 100 mL of acidified water; the polymer mixture was eluted with 200 mL of acidified ethanol (5% acetic acid). The eluate was concentrated in a rotary evaporator (Heidolph Digital Laborota pump 4011 coupled to V Pimo Vacum Buchi 700) at 28 °C and stored at 4 °C until use. Separation of the compounds was performed using an HPLC equipped with a C-18 ZORBAX eclipse plus column (100 mm × 2.1 mm, 3.5 μm) under isocratic elution with methanol: water (2:8 v:v). The HPLC system was coupled to a Brüker MicrOTOF II spectrometer operating in negative ion mode, scan range: 50–3000 amu, capillary voltage 3.8 kV, dry gas flow at 4.0 L min−1 and heated capillary temperature of 180 °C. Under these conditions an electrospray ionization-mass spectrometry (ESI-MS) analysis of the isolated compounds was performed.
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9

Nuclear Magnetic Resonance Spectroscopy

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1H and 13C-NMR spectra were recorded on Bruker AVANCE III HD 400 (Billerica, MA, USA) and 500 MHz spectrometer (Billerica, MA, USA) Chemical shift was presented in ppm and referenced by residual solvent peak. Mass spectrometry (MS) was either performed using a Bruker microTOF II spectrometer (Billerica, MA, USA) with electron spray ionization (ESI) or Bruker Autoflex III (Billerica, MA, USA) with matrix-assisted laser desorption/ionization (MALDI). Commercially available solvents and chemicals were used without further purification unless otherwise stated. Water was de-ionized and micro filtered. Flash column chromatography was performed using Biotage flash column chromatography purification system with SNAP Ultra cartridges (Charlotte, NC, USA). All cartridges used silica gel as stationary phase unless otherwise stated.
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10

Mass Spectrometry Protocol for Biomolecules

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The pH of each solution was adjusted according to the required pH values using 20 mM ammonium formate buffer exchange, dilute deaerated ammonium hydroxide, and/or dilute deaerated formic acid. ESI mass spectral data were collected using a Bruker Micro-TOF II spectrometer (Bruker Daltonics), calibrated with NaI in the positive ion mode. Settings: scan = 1000 to 4000 m/z; rolling average = 2; nebulizer = 2 bar; dry gas = 130 °C @ 8.0 L min−1; capillary = 4000 V; end plate offset = −500 V; capillary exit = 175 V; skimmer 1 = 30.0 V; skimmer 2 = 23.5 V; hexapole RF = 800 V. Spectra were collected for 1 to 3 min and deconvoluted with the maximum entropy application of the Bruker Compass Data Analysis software.
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