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33 protocols using ht15 1kt

1

Histological Analysis of Prostate Tissue

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Prostate tissues were fixed by 10% buffered formalin and paraffin embedded. H&E, Masson’s trichrome and immunofluorescence staining were performed using standard protocols on 5-μm paraffin sections. Masson’s trichrome stain was performed according to the manufacture’s instruction (HT15-1KT, Sigma- Aldrich, St. Louis, MO). For immunostaining, sections were deparaffinized, and antigen retrieval was performed by steam heating in Tris-EDTA Buffer (10mM Tris Base, 1mM EDTA Solution, 0.05% Tween 20, pH 9.0) for 10 min in steamer. Slides were incubated with 5% normal goat serum (Vector Labs, Burlingame, CA) and with primary antibodies diluted in 3% normal goat serum overnight at 4°C. Information for primary antibodies is listed in Supplementary Table 7. Slides were then incubated with secondary antibodies. Sections were counterstained with hematoxylin or NucBlue™ Fixed Cell ReadyProbes™ Reagent (Thermo Fisher). Immunohistological staining was imaged using Leica DM4B fluorescent microscope or LeicaSP8 confocal microscope (Leica Microsystems, Wetzlar, Germany). All representative images were quantified by the Image J software.
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2

Lung Histology Immunohistochemistry Protocol

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Lungs from experimental or control mice were inflation-fixed with 4% paraformaldehyde in 1× PBS overnight at room temperature. The tissue samples were rinsed in 1× PBS, dehydrated, and embedded in paraffin blocks. Five-μm-thick sections were cut, mounted on microscope slides, deparaffinized, and hydrated. Antigens retrieval was performed by microwaving the slides in 0.1% sodium citrate buffer (pH 6.0) for 45 s. Endogenous peroxide activity was blocked by treating sections with 3% H2O2 at 37 °C for 10 min. H&E or appropriate primary and secondary antibodies were used to stain tissues. DAB (3,3′-diaminobenzidine) was used as a substrate and hematoxylin was used as a counterstain. DAB intensity was quantified using ImageJ using the ‘IHC toolbox’ plugin as described.67 Masson’s trichrome staining was performed as per the manufacturer’s protocol with no modifications (Sigma-Aldrich; no. HT15-1KT).
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3

Lung Tissue Preparation for Histology

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The left lobe of the lung was inflated with 4% paraformaldehyde at 25 cm H2O of pressure. Lungs were stored in PFA overnight and then washed with PBS and dehydrated using a series of ethanol washes and then processed and paraffinized overnight using the Shandon Citadel 1000 tissue processor. After the tissues were paraffinized, they were embedded into paraffin blocks and sectioned into 7 µm slices using a Microm 325 microtome. Tissue was then deparaffinized as described previously (IHC Deparaffinization Protocol, Abcam). Masson trichrome staining was performed according to manufacturer’s instructions (Sigma Aldrich, HT15-1KT).
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4

Quantification of Cardiac Fibrosis

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Hearts were removed and fixed in 10% formalin for 48 hours, dehydrated with ethanol, and embedded in paraffin. Sections were cut at 7 µm, with 50 µm between each section, and Masson’s trichrome staining was performed (Sigma-Aldrich, HT15-1KT) according to the manufacturer’s instructions. Analysis and quantification of fibrosis was performed as previously described46 (link),50 (link), where 3 sections per heart were imaged on an Olympus BX51 microscope and quantified using ImageJ (NIH, Bethesda, MD).
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5

Histological Analysis of Sensor Implantation

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After the occlusion protocol, the animals were sacrificed with pentobarbital (200 mg/kg, IV) administrated to the ewe through the jugular vein. Death was confirmed by the cessation of circulation and breathing in both ewes and fetuses. Muscular tissue surrounding the insertion area of the electrochemical sensors inserted was carefully excised; fixed for one week by immersion in 10% buffered formalin and embedded in paraffin for further histological analyses. Paraffin blocks were serially cut in 5 μm thick transverse sections with a microtome and standard hematoxylin/eosin (Mayer’s Hematoyxlin, Ref. 51275 Sigma-Aldrich, Saint Louis, MO, USA; Eosin, Ref. 1.15935.0100 Merk, Darmstadt, Germany) and masson trichrome staining (Ref. HT15-1KT, Sigma-Aldrich, Saint Louis, MO, USA) were performed. One representative section from each sample was examined under an optic microscope (CH-9435, type DFC425C, Leica Microsystems, Hospitalet de Llobregat, Spain). Tissue integrity and cell infiltration were analyzed with hematoxylin eosin staining, whereas masson trichome staining was used for the evaluation of fibrotic reaction. The design of this study is summarized in Figure 1.
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6

Lung and Right Ventricle Fibrosis Analysis

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Paraffin embedded sections of lungs and right ventricles were de-paraffinized, rehydrated and stained with Masson’s trichrome as per manufacturer’s instructions (Cat # HT15-1KT, Sigma-Aldrich). Fibrosis was qualitatively determined by examining slides under a light microscope (Model Leica DMI 4000B) at 40X magnification.
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7

Histological Analysis of Thoracic Aorta

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Slices from thoracic aortas were stained with hematoxylin and eosin and photographed with an Olympus BX41 microscope. The area and thickness of tunica media and the lumen area were calculated using Image J (Version 2.0.0-rc-69/1.52p. National Institutes of Health, Bethesda, MD). Additional slices were stained with Masson’s trichrome to determine qualitative total collagen content following the instructions from the Sigma-Aldrich kit HT15-1KT. Images were captured and processed with bright field of the microscope Zeiss Axio Observer Z1 using bright field and the 10× objective.
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8

Cardiac and Lymph Node Tissue Analysis

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At indicated time points, rats were anesthetized by intraperitoneal injection of Ketamin-Xylazine. Following intracardiac perfusion of chilled PBS, the heart and MLN were collected and fixed with 10% NBF for 24 hours. After washing with PBS for 2 hours, the tissues were transferred to 30% (w/v) sucrose and incubated for 24 hours before embedding with OCT compound. A series of cryosections, 5μm-in-thickness, were cut and stored at −20°C for use.
Trichrome Masson staining was performed by following the user manual using commercial kit (Sigma, HT15-1KT). Picrosirius red staining was performed according to the manual (Abcam, ab150681). To perform immunostaining, cryosections were washed with PBS and balanced with blocking serum at RT for 1 hour, followed by incubation of primary antibodies at 4°C overnight. After three washes with PBS, the corresponding secondary antibodies were added for incubation at RT for 2 hours. DAPI-containing Fluoromount-G (Southern Biotech, 0100-20) was used for nucleus staining. TUNEL staining was performed by referring to the user manual (Promega, G3250). The antibodies used in this study were listed in Supplementary Table 2. Imaging was performed using the Olympus FLUOVIEW FV3000 confocal laser scanning microscope or ECHO Revolve microscope.
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9

Histological Analysis of Brown Adipose Tissue

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Brown adipose tissues fixed by 4% PFA (pH 7.4) were serially dehydrated in ethanol and xylene, and embedded in paraffin. Embedded samples were sectioned at 5 μm by microtome (Leica, German). Then, sections were dewaxed and rehydrated serially by incubation with xylene and different concentrations of ethanol. After that, sections were subjected to either hematoxylin & eosin staining, immunohistochemical staining or trichrome staining for histological examination. For immunofluorescence staining, antigen retrieval was performed by submerging in 0.01 M sodium citrate (pH 6.0) and boiled for 20 min in a microwave oven. Then, BAT sections were subjected to immunofluorescence staining (UCP1, 1:200, Santa Cruz, CA, sc-28766). For Masson Trichrome staining of collagen, rehydrated tissue sections were stained as described in the kit instruction (HT15-1KT, Sigma-Aldrich, St louis, MO). Images were taken under EVOS® Cell Imaging Systems (Mill Creek, WA, US).
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10

Histological and Functional Analyses of Aging Myocardium

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Hematoxylin and eosin staining (#051-06515, #131-09665, WAKO), Masson’s trichrome staining (HT15-1KT, Sigma), TUNEL assay, and immunofluorescent staining were performed on sections from formalinfixed, paraffin-embedded tissues. The myocyte cross-sectional area was measured from images captured from wheat germ agglutinin (WGA, W11261, Invitrogen)-stained sections. The outlines of 100-300 myocytes were traced in each section using NIH ImageJ. Lipofuscin was detected by autofluorescence in fluorescence microscopy. Lipofuscins appears as irregular granules that emit yellow-orange fluorescence between 500 and 640 nm, under any excitation wavelength ranging from 360 to 647 nm. SA-β-gal activity was determined using the Senescence β-Galactosidase Staining Kit (#9860S, Cell Signaling Technology) according to the manufacturer’s instructions. For mouse hearts, β-gal staining solution was used at a final pH of 5.0.
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