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22 protocols using glow discharged carbon coated copper grid

1

Visualizing Nanoparticle Surface Morphologies

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Surface morphologies of the prepared AgNPs, AuNPs, CuO-NPs, and Fe3O4-NPs were visualized through TEM. Colloidal solutions of nanoparticles were deposited on fresh glow discharged carbon coated copper grids (Electron Microscopy Sciences, UK) for 2 min, and the excess was removed by blotting. The sample was observed under standard conditions using a JEOL JEM-1230 TEM at 80 kV.
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2

Transmission Electron Microscopy of Protein Complexes

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Microscopy was conducted at the Emory University Robert P. Apkarian Integrated Electron Microscopy Core. A freshly purified fraction 10 from a Superose 12 purification was diluted 1:100 to approximately 0.01 mg/mL in 10 mM Na2HPO4/KH2PO4 pH 7.2, 200 mM NaCl and 0.02% DDM. These diluted samples (5 μl) were absorbed for 1 min onto glow-discharged, carbon-coated copper grids (Electron Microscopy Sciences, Hatfield, PA, USA). Grids were blotted, washed with three drops of buffer and negatively stained on a drop of freshly prepared and filtered 2% uranyl acetate solution. Samples were imaged at a nominal magnification of 40000x using a JEOL JEM-1400 transmission electron microscope (JEOL, Japan) operating at 80 kV. Electron micrographs were acquired on a 2048 by 2048 charge-couple device camera (UltraScan 1000, Gatan Inc, Pleasanton, CA, USA), yielding a pixel size of 2.6 Å at the specimen level. Reference-free 2D classification was carried out on particles selected using the automated boxing procedure on the EMAN2 images processing software package(Ludtke et al., 1999 (link)). Over 2000 particles were extracted from the micrographs, aligned, and 2D class averaged on EMAN2 to generate the images presented herein. 2D class averages were imported into 3dmod 4.9.12 (part of the IMOD software)(Kremer et al., 1996 (link)) and particle diameter was measured on images of the 2D classes.
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3

Negative Staining of Sheath Particles

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Purified sheath particles (4 µl) were adsorbed to glow-discharged, carbon-coated copper grids (Electron Microscopy Sciences) for 60 s, washed twice with milli-Q water and stained with 2% phosphotungstic acid for 45 s. The grids were imaged at room temperature using a Thermo Fisher Morgagni transmission electron microscope (TEM) operated at 80 kV.
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4

Transmission Electron Microscopy Sample Preparation

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TEM samples were prepared using glow-discharged carbon-coated copper grids (Electron Microscopy Sciences). The grids were floated on 5 μL of sample for 5 min, washed with 2 drops of distilled water, and stained with 2% ammonium molybdate or uranyl acetate. Micrographs were obtained using a Tecnai T12 electron microscope (FEI) operating at 120 keV. Images were analyzed using ImageJ.32 (link)
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5

Isolation and Characterization of CSF Exosomes

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Exosomes in cell-free CSF were isolated using the ExoLutE exosome isolation kit (Rosetta Exosome Inc., Gyeonggi-do, Korea) according to manufacturer instructions. Briefly, thawed CSF samples were pre-filtered by a 0.45 µm syringe filter (Millex®, Merck, Darmstadt, Germany) to remove debris and protein aggregates. Cell-free CSF were further concentrated with 100 kDa MWCO centrifugal ultrafiltration device (Amicon®, Merck, Darmstadt, Germany). Intact forms of exosomes in 8 mL concentrated CSF were purified by a method that comprises exosome precipitation with metal-affinity and further purification with a spin-based size-exclusion chromatography. The purified CSF exosomes were subsequently subjected on transmission electron microscopy to determine their shapes and ultrastructures. Then, 5 µL of exosome preparation at 1 × 109 particles /µL were adsorbed onto glow-discharged carbon-coated copper grids (Electron Microscopy Sciences, Hatfield, PA, USA) for 5 min. After excess liquid removal, the grid was washed 10 times with PBS and subsequently stained with 2% uranyl acetate (Ted Pella, Redding, CA, USA). The grid was finally examined in JEM 1011 microscope (JEOL, Tokyo, Japan), and images were recorded with an ES1000W Erlangshen CCD Camera (Gatan Inc. Pleasanton, CA, USA).
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6

Transmission Electron Microscopy of Nanoparticles

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Purified NP at 0.01
mg/mL was applied to glow-discharged carbon-coated copper grids (Electron
Microscopy Sciences) and stained with uranyl acetate immediately before
imaging. Transmission electron microscopy images were collected using
a Talos L120c microscope (120 kV) with a LaB6 thermionic
source at 92,000× magnification and a defocus of between −0.2
and 0.5 μm. For the NP + RNA condition, NP at 0.01 mg/mL was
mixed with a single-stranded 25mer (Table S3) at a 2 molar-excess to the NP monomer. The NP + RNA was incubated
at room temperature for approximately 15 min and then imaged as for
the NP without RNA condition.
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7

Cryo-EM Imaging of Mastigonemes and C. reinhardtii

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Isolated mastigonemes (0.2–0.7 mg/mL) or whole C. reinhardtii cells (107 cells/mL) were applied to glow-discharged carbon-coated copper grids (Electron Microscopy Sciences). After 1 min incubation, the grids were blotted, immediately washed twice with 1.5% uranyl formate solution, and stained for 90 s with 1.5% uranyl formate solution. The grids were examined using a 120 kV Tecnai T12 (Thermo Fisher Scientific) microscope. Images were recorded using an Ultrascan 895 CCD camera (Gatan).
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8

Negative Staining for MAC Visualization

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The presence and homogeneity of the complete MAC in each fraction was assessed by negative stain electron microscopy. A volume of 2.5 μl of MAC was applied to glow-discharged carbon-coated copper grids (Electron Microscopy Sciences). Grids were negatively stained with 2% uranyl acetate. Images were taken under low-dose conditions at a nominal magnification of 52,000 on a Tecnai 12 electron microscope (FEI) operated at 120 kV. Images were recorded on a 2 k × 2 k TemCAM-F216 CMOS camera (TVIPS) at 2.49 Å per pixel.
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9

Negative Staining of Extracellular Vesicles

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Extracellular vesicles (EVs) were evaluated morphologically through negative staining. First, 5 μl of EV suspended in PBS was loaded onto glow-discharged carbon-coated copper grids (Electron Microscopy Sciences, Hatfield, PA, USA). After sample adsorption for 3 to 5 s, the grid was blotted with filter paper and stained with 2% uranyl acetate. Next, samples were dried for 20 s using a dryer. EVs were viewed with Tecnai G2 Retrofit (FEI Company, Hillsboro, OR, USA) at a voltage of 200 kV.
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10

Imaging Extracellular Vesicles by Electron Microscopy

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The purified ESC-NVs were applied to glow-discharged carbon-coated copper grids (Electron Microscopy Sciences, Fort Washington, PA, USA). After ESC-NVs had been allowed to be absorbed onto the grid for 1 hour, the grids were fixed with 4% paraformaldehyde for 10 minutes and rinsed with droplets of deionized water and then, negatively stained with 2% uranyl acetate (Ted Pella, Redding, CA, USA). Electron micrographs were recorded with a JEM 1011 microscope (JEOL, Tokyo, Japan) at an acceleration voltage of 100 kV as described previously19 (link).
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