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55 protocols using srt1720

1

Protein Modification and Regulation Assays

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NButGT, Ac-5SGlcNAc were provided by D. Vocadlo (Simon Fraser University)(48 (link)). SRT1720, EX-527, Compound C purchased from Selleck-Chemicals (Houston, TX). MG132 purchased from Sigma-Aldrich (St. Louis, MO). pcDNA3.1-SIRT1-Flag was gift from E. Verdin (Addgene plasmid#: 13812). pLenti4-HA-OGT (provided by K. Vosseller, Drexel University). Antibodies used: anti-actin, anti-FOXM1 and anti-RL2 from Santa Cruz Biotechnology; pERK1/2, anti-OGT and anti-O-GlcNAc from Sigma-Aldrich; anti-acetylated p53(K382), anti-AMPK, anti-pAMPK(S172), anti-ERK1/2, anti-MMP2, anti-pRaptor(792), anti-Raptor, anti-SIRT1 and anti-Ubiquitin(K48) from Cell Signaling (Danvers, MA); anti-Cdh1 and anti-p53 from Neobiolabs; anti-MMP9 from Novus-Biologicals (Littleton, CO); integrin α5 and α6 are from BD-Pharmingen (San Jose, CA).
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2

Autophagy Modulation: Evaluating Molecular Mechanisms

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Sodium fluoride, thiazolyl blue tetrazolium bromide (MTT), chloroquine (CQ) (autophagy inhibitor), dimethyl sulfoxide (DMSO), rapamycin (autophagy activator) and 3-MA (autophagy inhibitor) were purchased from Sigma-Aldrich. The SIRT1 activator SRT1720 and inhibitor Ex- 527 were purchased from Selleck Chemicals. rapamycin and CQ were dissolved in PBS, 3-MA, SRT1720 and Ex-527 were dissolved in DMSO to provide a working stock solution. The DMSO concentration was maintained at 0.1% in all cell cultures, and it did not exert any detectable effect on cell growth nor cell death. Anti-LC3, anti-cleaved-caspase-3 and anti-FoxO1 antibodies were purchased commercially (Cell signal technology, CA, USA). Anti-Ac-FoxO1, HRP-conjugated goat anti-mouse and goat anti-rabbit antibodies were purchased from Santa Cruz Biotech Company. Anti-Bnip3 and anti-Rab7 were purchased from Abclonel Company.
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3

Activating SIRT1 in hMSCs for Aged Hearts

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The SIRT1 specific activator SRT1720 and inhibitor EX-527 were all purchased from Selleck Chemicals (Houston, TX, USA), and dissolved into an organic solvent, dimethylsulfoxide (DMSO) before the treatment of hMSCs. To avoid the solvent disturbance of DMSO, concentrations of DMSO are less than 0.1% and the same in different treatment groups. Cells were exposed to fresh complete medium supplemented with different concentration of SRT1720 for different time points, followed by treatment with different cell stress models, to evaluate the optimal SRT1720 concentration and optimal timepoint by using CCK-8 test. For in vivo experiment, aged hMSCs were cultured in 10cm dishes before treatment. When cultured to 80% confluence, cells were pretreated with (SRT1720 group) or without SRT1720 (DMSO group), while the concentration of solvent DMSO is <0.1% and the same in both groups. After pretreated for 24 h, cells were collected in DMEM for implantation into rat hearts.
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4

Hepatocyte SRT1720, RSV Activation

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Mouse hepatocytes were processed by 1 mmol/L SRT1720 (Selleck Chemicals, Houston, TX, USA) or 10 mmol/L RSV for 24 h. RNA and protein of the cells were extracted, and qRT-PCR and western blot analysis were used to detect the activation efficiency. DMSO was added to the medium as a control.
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5

Investigating NF-κB Transcriptional Activity

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HEK 293T cells were plated in 24-well plates 24 h before transfection. When the cells reached 40–50% confluence, they were transfected with a plasmid containing the promoter sequence of NF-κB using Lipofectamine 3000 transfection reagent (Invitrogen). Ex527 (40 μM; Selleckchem) and SRT1720 (2 μM; Selleckchem) were added at the same time. Twenty-four hours later, the cells were lysed in 1 × PLB and luciferase assays were performed using the Dual-Luciferase Reporter Assay System (Promega) as recommended by the manufacturer. All luciferase assay experiments were performed in triplicate.
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6

Resveratrol and SRT1720 Activate Mitochondrial Biogenesis

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Cells were treated with 1 mM H2O2 (Sigma-Aldrich, USA) for 2 h. To activate mitochondrial biogenesis, cells were preincubated with 5 μM resveratrol (Sigma-Aldrich) or 0.5 μM SRT1720 (Selleck, USA) for 24 h. Cell viability was detected using CCK-8 kits (DOJINDO, Japan) according to the manufacturer's protocols. Briefly, cells were plated into a 96-well plate. At the indicated time after treatments, 10 μl CCK-8 solution was added into the wells. Cells were then incubated at 37°C in an incubator for 1 h. Then, a microplate reader (Labsystems Dragon, Finland) was used to measure the absorbance at 450 nm.
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7

Molecular Mechanisms of PEPCK1 Regulation

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The HEK293T cell line was a gift from the Zhao lab of Fudan University (Shanghai, China). Cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM) (Invitrogen, Carlsbad, CA, USA) containing 10% fetal bovine serum (Invitrogen), penicillin (Invitrogen) (100 U/ml), and streptomycin (Invitrogen) (100 U/ml). Full-length PEPCK1 (wildtype, 3K/R and 3K/Q) and SIRT2 (wildtype and H187Y) plasmids were also gifts from the Zhao lab of Fudan University (Shanghai, China). Plasmids were cloned to Flag- or HA-tagged destination vectors according to different needs. Point mutations for PEPCK1 and SIRT2 were generated by site-directed mutagenesis. Antibodies against Flag (Sigma, St. Louis., MO, USA), HA (Santa Cruz, Dallas, TX, USA), PEPCK1 (Santa Cruz), SIRT2 (Sigma), α-Tubulin (CST, Danvers, MA, USA), acetylated α-Tubulin (Abcam, Cambridge, UK), and β-actin (Sigma) were all purchased, and the polyclonal antibody against acetyl-lysine was a gift from the Zhao lab. Trichostatin A (CST), nicotinamide (Sigma), sirtinol (Selleck, Houston, TX, USA), MG132 (Sigma), EX527 (Selleck), SRT1720 (Selleck), and CHX (Sigma) were all purchased. Control and siSIRT2 adenovirus were purchased (Vector Biolabs, Malvern, PA, USA).
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8

Dietary SRT1720 and Cholic Acid Protocol

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SRT1720 was purchased from Selleck Chemicals (Houston, TX, USA). 1% cholic acid supplemented chow was custom obtained from Harlan Teklad Laboratories (WI, USA).
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9

SIRT1 Modulation and NF-κB Regulation

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TNF-α was ordered from PeproTech (Rocky Hill, NJ, USA). SRT1720 and Ex527 were obtained from Selleck Chemicals (Houston, TX, USA). Sirtinol and pyrrolidine dithiocarbamate (PDTC) were purchased from Sigma-Aldrich (St. Louis, MO, USA). SIRT1 siRNA, NF-κBp65 siRNA, and the scrambled negative controls were purchased from GenePharma (Shanghai, China). Recombinant plasmid pcDNA3.1(+) was sponsored by Dr. Bu. To overexpress SIRT1, the cells cultured in 6-well plates were transfected with recombinant plasmid pcDNA3.1(+)-SIRT1. To knockdown endogenous SIRT1 and NF-κB, IMCD cells were transfected with 100 nM SIRT1 siRNA or NF-κBp65 siRNA. Transfection was carried by using Lipofectamine 2000 (Invitrogen, NY, USA) according to the manufacturer’s protocol. The cells were harvested 48 h after transfection to assess the expression of SIRT1 or NF-κBp65.
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10

Zinc Regulation in Cellular Metabolism

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HEPES sodium salt, HEPES, potassium chloride, calcium chloride dihydrate, D-(+)-glucose, collagenase V, insulin, rosiglitazone, ZnCl2, ZnSO4 and TPEN (an intracellular membrane-permeable chelator for various ions, including zinc) were purchased from Sigma (Saint Louis, MO). Total OXPHOS Rodent WB was purchased from Abcam (Cambridge, MA). The Dual Luciferase Assay Kit was obtained from Promega (Madison, WI). Fluo-4 AM, cell-permeant Rhodamine 123 and 2-NBDG were purchased from ThermoFisher Scientific (Waltham, MA). SRT1720 and ZLN005 were purchased from Selleck (Houston, TX). The zinc detection kit was purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, JS, China).
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