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6 protocols using anti p53 clone do7

1

Immunohistochemical Protein Profiling

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IHC was performed using the Bond Max and Bond III autostainers (Leica Microsystems, Wezlar, Germany). For p21 protein expression, the mouse monoclonal antibody (Clone SX118, Dako, DK; 1:60 dilution, 30' incubation) was used. Proteins p27 and p63 were assessed using mouse monoclonal antibodies (clone SX53G8, Dako; at dilution 1:150, 30' incubation and clone 7JUL at 1:50 dilution, 1h incubation at room temperature respectively). p53 protein expression was assessed with anti-p53 clone DO7 (DAKO) at 1:100 dilution, upon antigen retrieval in citric acid for 20 min. Cyclin D1 protein expression was assessed using the rabbit monoclonal antibody (clone SP4, Spring Bioscience, USA; 1:200 dilution, 1h incubation at room temperature), cyclin E1 protein using the rabbit monoclonal antibody (clone EP435E, Novus Biologicals, Littleton, CO; 1:80 dilution, 30' incubation) and CD117 with the polyclonal rabbit antibody (code A4502, Dako). The antigen–antibody complex was visualized using DAB as a chromogen. Slides were counterstained with Mayer’s hematoxylin for 10 min (Leica), washed in water, dehydrated and mounted.
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2

Immunohistochemical Evaluation of MMR and p53

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We evaluated the expression of four MMR proteins and of p53 by IHC using an automated stainer (Ventana, Tucson, AZ, USA). Primary antibodies included anti-MLH1 (Clone G168-728), anti-MSH2 (Clone G219-1129), anti-MSH6 (Clone 44), and anti-PMS2 (Clone EPR3947), all purchased from Roche (Basel, Switzerland). These antibodies were selected based on a previous study that recommended their use in IHC as a sensitive method to detect tumors with MSI.24 (link) The anti-p53 (Clone DO-7) and anti-D2-40 antibodies (Item number M3619, Clone D2-40) were purchased from DAKO (Carpinteria, CA, USA). Omission of the primary antibody was used as negative controls. For MMR proteins, normal colonic mucosa and lymphocytes were used as positive internal controls. Complete loss of nuclear staining in tumor cells was considered loss of expression. The absence of expression of any of the four MMR proteins was defined as dMMR. Tumors with preserved expression of all MMR proteins were considered mismatch repair protein proficient (pMMR). Known p53-positive cases were used as positive external controls for p53 immunostaining. Cases with at least 10% of the tumor cells exhibiting nuclear p53 staining were considered positive.25 (link)
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3

p53 IHC Assay for AI Response

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To identify whether p53 accumulation influenced response to AI treatment, we performed IHC assay. Anti-p53 (Clone DO-7, DAKO, Carpinteria, CA, USA) antibodies were used at 1:100 dilution with a 10-minute high-temperature antigen retrieval in citrate buffer (pH=6.0). Detection was by EnVision+ (DAKO) with diaminobenzidine chromogen as per routine protocol. Known positive and negative controls were used to ensure the quality control of staining.
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4

Immunohistochemical Detection of p53

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FFPE tissue specimens were cut into approximately 4-µm thick sections and attached to positively charged glass slides (Superfrost Plus, Menzel Gläser, Braunschweig, Germany).
Before immunostaining, the sections were treated in a pressure cooker reaching maximum temperature of 121°C using Tris-HCL buffered saline, pH 9.0 as retrieval solution. The sections were incubated with a primary monoclonal antibody (anti-p53, clone DO-7, Dako, Glostrup, Denmark) at room temperature for 30 minutes (dilution 1:100). A polymer-detection system was used (EnVision Plus-HRP, Dako, Glostrup, Denmark) according to manufacturer’s instructions. Diaminobenzidine was used as chromogen.
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5

Western Blot Analysis of Ku80 and p53

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Sub-confluent cells were trypsinized and washed once in PBS. Total proteins were extracted by solubilizing the cell pellets in urea buffer (8 M urea, 0.1 M NaH2PO4, 10 mM Tris pH 8, 0.1% mercaptoethanol). Protein concentration was quantified by the Bio-Rad protein assay (Bio-Rad Laboratories, CA). Proteins (30 μg) were separated by electrophoresis on NuPage 4% to 20% Bis-Tris gels (Life Technologies Corporation, CA) and transferred onto Immobilon-P membranes (Millipore, MA) according to the manufacturers’ directions. Western blot analyses of proteins were carried out by using anti-Ku80 (C48E7) (Cell Signaling Technology Inc., MA) and anti-p53 clone DO-7 (Dako North America, CA) antibodies. The primary antibodies were detected using fluorescently labeled anti-mouse and anti-rabbit secondary antibodies at a dilution of 1:10,000 and obtained from Li-Cor and were visualized by scanning the blots on a Li-Cor Odyssey® (LiCOR, NE).
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6

Histological Evaluation of HNSCC Tumors

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The morphology of the patients’ tumor tissue and their corresponding PDX was studied by an expert pathologist. Histopathology of primary tumors and PDX followed standard protocols for HNSCC diagnostics including HE staining and immunohistochemistry; antibodies: anti-p16 (clone: G175-405, BD Bioscience, Heidelberg, Germany), anti-Ki-67 (Clone Mib-1, Dako, Glostrup, Denmark), anti-PD-L1 (Clone 22C3, Dako), and anti-p53 (Clone Do7, Dako). Standard immunoperoxidase technique was applied using an automated immunostainer, Autostainer Link48 (DAKO) with diaminobenzidine as chromogen.
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