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2 d sds page standards

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The 2-D SDS-PAGE Standards are a set of pre-stained protein markers designed for use in two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis (2-D SDS-PAGE) analysis. The standards provide molecular weight and isoelectric point references for the identification of proteins separated by this technique.

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2 protocols using 2 d sds page standards

1

Two-Dimensional Gel Electrophoresis Workflow

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Where applicable, consumables were of electrophoresis grade or higher. Vacutainer® SST (serum-separator tubes) and 21G butterfly needles were from BD (Franklin Lakes, NJ, United States). ReadyStripTM immobilized pH gradient (IPG) strips (17 cm, pH 3–10 non-linear), Bio-Lyte carrier ampholytes (pH 3-10, pH 4-6), and 2-D SDS-PAGE Standards were from Bio-Rad Laboratories (Hercules, CA, United States). AEBSF, agarose I, bovine serum albumin (BSA), CHAPS, dithiothreitol (DTT), leupeptin, mineral oil, and TG-SDS buffer concentrate were from Amresco (Solon, OH, United States). Acetic acid was from Anachemia (Montreal, Quebec); sodium dodecyl sulfate (SDS) was from J. T. Baker Chemical Co. (Phillipsburg, NJ, United States); mass spectrometry-grade trypsin was from G-Biosciences (St. Louis, MO, United States); Coomassie Brilliant Blue G-250 (CBB) was from Genlantis (San Diego, CA, United States); and Broad-range (200–10 kDa) Unstained Protein Standard was from New England Biolabs (Ipswich, MA, United States). Ammonium persulfate and aprotinin were from Thermo Fisher Scientific (Waltham, MA, United States). Acetonitrile, formic acid, and methanol were from EMD Millipore (Burlington, MA, United States). Acrylamide/bis-acrylamide (37.5:1) solution and all other chemicals utilized were from Alfa Aesar (Haverhill, MA, United States). Double glass-distilled water (ddH2O) was used throughout.
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2

2D-SDS Gel Electrophoresis Analysis

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2D-SDS gels were scanned as TIFF file extensions at 300 dpi using Image Scanner III (GE Life Sciences, Pittsburg, USA) and analyzed using PDQuest 8.1 (Bio-Rad). Each sample was analyzed in duplicate, resulting in 12 gels per time point. A total of 36 gels were performed during the experiment. A master gel was constructed, which included spots of a reference gel and spots consistently present in the other 2D maps. Landmark spots, present in key regions of the gels, matched in every member of the match set. Also, 2D SDS-PAGE Standards (Bio-Rad) were used as internal controls and for gel landmark references. Quantification of protein spots in the gels was given as parts per million (ppm) of the total integrated optical density of spots [30] (link).
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