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69 protocols using bca assay kit

1

Protein Extraction and Western Blot Analysis

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The cells were collected and lysed in lysis buffer (50 mM Tris-HCl, pH7.4; 100 mM NaCl; 1 mM EDTA; 1 mM EGTA; 1 mM NaF; 0.1% SDS; 0.5% sodium deoxycholate; 1% Triton-X-100; 10% glycerol; protease and phosphatase inhibitor cocktails) on ice. Protein quantification was conducted with the BCA assay kit (Bio-Rad, Hercules, CA, USA). Equal amount of total protein lysates (about 25 µg) was subjected to 8% to 15% SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane. The PVDF membrane then was blocked with 5% non-fat milk for 1 h followed by incubation with the specific primary antibodies at 4°C overnight. The primary antibodies are the following: PHLPP (1:2000, ProteinTech 22789-1-AP), PHLPP2(1:2000, ProteinTech25244-1-AP), phospho-EGFR Y1068 (1:1000, CST#3777), EGFR (1:1000, CST#4627), phosphoERK-p44/42(1:2000, CST#4370), ERK1/2(1:1000, CST#4695) phospho-AKT S473 (1:2000, CST #4060), AKT(CST#4685), β-Actin (CST#8457). The membrane was then incubated with the horseradish peroxidase-labeled secondary antibody (ab205718, Abcam) for 1 h at room temperature. Signal was detected using the ECL detection kit (Thermo Fisher) and a FluoChem digital imaging system (Alpha Innotech, San Leandro, CA, USA). Band intensity was quantified by the software Image J (NIH, Bethesda, MD, USA).
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2

Protein Extraction and Western Blot Analysis

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Cells were lysed in a lysis buffer. The protein concentrations were determined using a bicinchoninic acid (BCA) assay kit (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Equal amounts (20–25 µg) of protein lysate were then resolved on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Burlington, MA, USA), and immunoblotted as formerly described (15 (link)).
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3

Western Blot Analysis of Glucose Metabolism Proteins

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Transfected SW480 and SW620 cells were washed with PBS and lysed using Western cell lysis buffer (Beyotime Institute of Biotechnology). Protein concentrations were determined by the BCA assay kit (Bio-Rad Laboratories, Inc.). A total of 20 µg protein samples were separated using 10% SDS-PAGE and transferred to PVDF membranes (EMD Millipore) followed by blocking with 5% non-fat milk at 37°C for 1 h. Subsequently, the membranes were probed with primary antibodies against glucose transporter 1 (GLUT1; cat. no. ab40084; 1:5,000; Abcam), lactate dehydrogenase A (LDHA; cat. no. ab226016; 1:8,000; Abcam), CKS1B (cat. no. SAB1408846; 1:8,000; Sigma-Aldrich; Merck KGaA) and GAPDH (cat. no. ab37168; 1:20,000; Abcam) at 4°C overnight. The membranes were probed with a horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (cat. no. ab205718; dilution of 1:5,000; Abcam) at 37°C for 2 h after washing three times with TBS + 0.1% Tween-20 (Sangon Biotech Co., Ltd.). The immunoblot was visualized using an enhanced chemiluminescence (ECL) chromogenic substrate (GE Healthcare). Image Lab analysis software (V4.0; Bio-Rad Laboratories, Inc.) was used to analyze the intensities of protein bands.
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4

Western Blot Analysis of Primary Neurons

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Primary cortical neurons were lysed using Radio-immunoprecipitation assay buffer (RIPA) buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1 mM EGTA, 1 mM EDTA, 1% Triton X-100, 1 mM Na3VO4, 5 mM NaF, and a protease inhibitor cocktail). Lysates were centrifuged at 15,000× g for 20 min at 4 °C, and the supernatant was transferred to fresh tubes. The obtained protein was measured by a BCA assay kit (Bio-Rad, Hercules, CA, USA).
Equal amounts of protein were heated in a 4X protein-loading buffer, and were subjected to SDS-PAGE for protein size separation. After gel electrophoresis, proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Burlington, MA, USA) and blocked in 5% skimmed milk in 1X TBST for 1 h. The membranes were probed in primary antibody for overnight at 4 °C and washed three times with 1X TBST (1X TBS, 0.1% Tween-20), and then incubated in appropriate secondary antibodies. After washing three times in 1X TBST, the protein bands were detected using Western HRP substrate (Luminata Forte, Millipore) in a chemiluminescence imaging system (Fusion FX, Vilber Lourmat, Collégien, France). The antibodies used are listed in Table 1.
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5

Western Blot Analysis of Placental Proteins

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The placental tissues were homogenised on ice in radio-immune precipitation assay (RIPA) lysis buffer containing 50 mM Tris-HCl (pH 7.6), 1% NP-40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulphate (SDS), phenylmethylsulphonyl fluoride (PMSF), 1 mg/L aprotinin and 1 mg/L leupeptin. The samples were centrifuged and the protein concentrations of the supernatants determined using the BCA assay kit (Bio-Rad). Equivalent quantities of protein (50 µg) from each group were separated using 10% SDS-polyacrylamide gel electrophoresis (PAGE). The separated protein bands were transferred to polyvinylidene difluoride (PVDF) membranes (Invitrogen, Carlsbad, CA, USA) and blocked for 60 min at 37℃ using Tris buffered saline with Tween-20 (TBST) buffer (20 mM Tris pH 7.6, 137 mM NaCl and 0.1% Tween 20) with 5% non-fat milk. The membranes were incubated overnight at 4℃ with specific primary antibodies (1:1,000) and then washed with TBST three times. Finally, the membranes were incubated at 37℃ for 60 min with HRP-labelled secondary antibodies (1:2,000). The positive bands were detected using an enhanced chemiluminescence detection kit (Merck Millipore, Burlington, MA, USA) and analysed using a ChemiDoc XRS imaging system (Bio-Rad). β-Actin was used as an internal control to normalise protein concentrations.
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6

Western Blot Analysis of Cellular Proteins

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Total cellular proteins were extracted using RIPA lysis buffer supplemented with a proteinase inhibitor cocktail, and the concentration of proteins in the centrifuged lysis buffer was determined using a commercially available BCA Assay Kit (Bio-Rad, Hercules, CA, USA). Total protein (20 μg) in the supernatant was mixed with 2× SDS loading buffer and then loaded onto a 10–12% precast Bis-Tris gel (Invitrogen). After electrophoresis, the separated proteins were transferred to PVDF (polyvinylidene difluoride) membranes (Millipore, Billerica, MA, USA) and blocked with 5% skim milk powder at room temperature for 60 min. Then the membranes were incubated with 1.0 μg/ml primary antibodies against LDHA, γ-H2AX, and β-actin (Cell Signaling Technology, Beverly, MA, USA) overnight at 4°C, respectively. Afterward, the membranes were washed and incubated with horseradish peroxidase-conjugated secondary antibodies (1:1,000 dilution) for 60 min at room temperature. The target proteins were indicated using ECL Western blotting detection reagents (ECL New England Biolabs, Beverly, MA, USA). Quantification of the target proteins was performed using a Bio Image Intelligent Quantifier 1-D (Version 2.2.1; Nihon-BioImage Ltd., Tokyo, Japan) with β-actin used as an internal control.
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7

Protein Extraction and Western Blot Analysis

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Cells were collected by using scraper after being washed once with cold PBS and incubated for 30 min on ice with RIPA buffer (ATTO Corporation, Tokyo, Japan) and a proteinase and phosphatase inhibitor (Thermo Fisher). The lysate were then cleared by centrifugation (15,000 rpm, 4 °C, 20 min). The Protein concentration was determined by BCA assay kit (Bio-Rad, Hercules, CA, USA). Samples containing 10 μg of protein were prepared for 6–15% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was blocked with 5% skim milk (Gibco) for 50 min and blocked membrane was washed with TBST solution 4 times every 8 min. After that, membrane was incubated with primary antibody overnight at 4 °C. The membrane was washed and incubated with HRP-conjugated secondary antibody (1:10,000) at room temperature for 2 h. The western blotting bands were visualized by using chemiluminescence (BioRad, Hercules, CA, USA). Densitometric analysis was performed with the Image J software (developed by Wayne Rasband, National Institutes of Health, Bethesda, MD, USA).
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8

Quantifying Synaptic Proteins in Brain

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Total protein was extracted from cerebral cortex of brain hemisphere. Briefly, brain tissue was homogenized in RIPA lysis buffer (CST) with further centrifugation at 14,000× g at 4°C for 30 min. Protein concentration in the supernatant was determined using the BCA assay kit (Bio-Rad). Equal amounts of protein were loaded on a SDS–PAGE gel. After being electrophoresed and transferred to a PVDF membrane, the membrane was blocked and incubated with the primary antibodies against Synapsin 1 (CST; 1:2,000), Post-synaptic density protein 95 (PSD95; Thermo Fisher Scientific, Waltham, MA, USA; 1:2,000), Aβ (CST; 1:2,000), actin (Sigma; 1:6,000), or GAPDH (Abcam; 1:5,000) overnight at 4°C. The membrane was then incubated with fluorescence-labeled secondary antibodies (Thermo Fisher Scientific) for 1 h at room temperature against light. After washing, the membrane was then scanned with the Odyssey CLx Imaging System. The data were analyzed with the NIH ImageJ software. The values in the figures represent relative density of the bands normalized to GAPDH/actin.
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9

Western Blot Analysis of SP1 and GAPDH

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Tissue samples were lysed with RIPA buffer (Dingguo, Inc., Beijing, China) for protein extraction. Protein concentration was determined by the BCA assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Equal amounts (10 µg) of total protein was loaded onto SDS–PAGE gels and transferred to polyvinylidene difluoride (PVDF) membranes, which were prepared by formaldehyde activation for 5 minutes and being lysed in Tris-buffered saline for 10 minutes. Subsequently, the membranes were incubated in blocking buffer (5% non-fat milk) for 1 hour, then immunoblotted overnight at 4°C with primary antibodies against SP1 (Abcam) or GAPDH (Bioleaf, Shanghai, China). After washing the membranes three times for 15 minutes with TBST [10 mM Tris–HCl (pH 7.4), 0.5 M NaCl, Tween 20 (0.1% v/v)], the membranes were incubated for 90 minutes with the corresponding horseradish peroxidase-conjugated secondary antibodies (1:2000; Invitrogen), followed by washing the membranes three times for 10 minutes with TBST. Immunoreactive bands were detected by the enhanced chemiluminescence system (Pierce, Rockford, IL, USA) and quantifications were estimated using Image Lab 4.1 software (Bio-Rad Laboratories, Hercules, CA, USA).
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10

Osteopontin Secretome Impacts Angiogenesis

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In order to prepare the CM secreted from cell clones, the cell number was normalized by plating OvCar-3 and PC-3 at the same cell density (5×105 cells) for each individual OPNc and EV-overexpressing cell clone. After reaching 80% cell confluence, cells were washed twice with phosphate-buffered saline and cultured with RPMI in serum-free conditions for 48 h. Collected CM was clarified by centrifuging at 1500 rpm for 5 min. All functional assays were performed using freshly prepared CM. Total protein concentration of this CM was measured using the BCA assay kit (BioRad) with bovine serum albumin as a standard, according to the manufacturer’s instructions. In each CM sample, we used 150 μg of total protein extract. CM produced by OPNc-overexpressing cells or those transfected with EV controls, which were termed OPNc-CM and EV-CM, respectively, were used for HUVEC endothelial adhesion, proliferation and migration assays, as described below. OPNc overexpression was analyzed by qRT-PCR and immunoblot.
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