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7 protocols using ni nta agarose

1

Quantifying LprA-AcGFP1 at Bacterial Poles

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Fluorescence of LprA-AcGFP1 was observed using an inverted fluorescence microscope (IX-83, Olympus) with a 100× oil immersion objective lens (UPLSAPO100XO, NA 1.4, Olympus) and an sCMOS camera (Prime95B, Photometrics). AcGFP1 was excited by a 130 W mercury light source system (U-HGLGPS, Olympus) with a fluorescence mirror unit U-FGFP (Excitation BP 460–480; Emission BP 495–540, Olympus). Fluorescence image processing was performed with the ImageJ version 1.53 software (National Institutes of Health).
The number of LprA-AcGFP1 at the cell pole was estimated by comparing the fluorescence spot intensity at the pole with the fluorescence intensity of a single His-AcGFP1 molecule as previously reported36 (link). His-AcGFP1 was purified from E. coli C41(DE3) cells carrying pET19b/ His-AcGFP1 using Ni–NTA agarose (Fujifilm Wako). 10 pg/ml of His-AcGFP1 solution was applied to a coverslip washed by 0.1 M KOH and observed by fluorescence microscopy. In the fluorescent images, a rectangular mask for the fluorescent spot of 30 × 30 pixels was applied to the ROI (region of interest). We defined the spot intensity as the sum of all pixel values within the rectangular mask after subtracting the total background intensity from each pixel value. The number of LprA-AcGFP1 per pole was estimated as the intensity of the cell pole divided by the average intensity of a single His-AcGFP1 molecule.
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2

Production of Recombinant Proteins in E. coli

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The pET20b(+)−based human factor IX EGF1 expression plasmid was described [66 (link)]. The pET20b(+)−based human THBS1-TSR3 expression plasmid was described [67 (link)]. Recombinant EGF repeat and TSR proteins were expressed in Escherichia coli BL21(DE3) cells and purified by Ni-NTA agarose (Wako) and RP-HPLC as previously described with a slight modification [68 (link)].
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3

Recombinant Protein Expression and Purification

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Recombinant GST- or His6-tagged proteins were expressed in and purified from E. coli. The BL21(DE3)pLysS bacterial cells were transformed with pGEX-6P- or pET30-based vectors, cultured, and then exposed to 0.5 mM isopropyl-β-d-thiogalactopyranoside for 16 h at 10 °C. The cells were then subjected to ultrasonic treatment, and the soluble fraction of cell lysates was purified. The expressed GST-tagged proteins were purified with glutathione-Sepharose 4B beads (Amersham Biosciences) and were eluted from the beads with reduced glutathione. The expressed His6-tagged proteins were purified with Ni-NTA agarose (Wako) and were eluted with imidazole (Wako). Purified proteins were concentrated with an Amicon Ultra device (Merck Millipore, Tokyo, Japan) and dialyzed against PBS with a Mini Dialysis Kit (GE Healthcare).
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4

Purification and Western Blot Analysis of Notch Proteins

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The plasmid used for the mass spectral analyses were pSecTag2c-mouse NOTCH1 EGF1-36-Myc-His6, mouse NOTCH1 EGF1-18-Myc-His6, mouse NOTCH1 EGF19-36-Myc-His6 or mouse NOTCH1 EGF24-28-Myc-His6 [26 (link)], and pSecTag2c-mouse NOTCH2 EGF1-36-Myc-His6 [23 (link)]. HEK293T cells (7.0 × 106) were seeded in a 100/20 mm cell culture dish in DMEM, 10% calf serum, and transiently transfected with 1 μg/well plasmids, using PEI. After 4–5 h, the medium was changed to 6 mL of OPTI-MEM I. The cells were cultured for another 3 days. For the purification of the Notch proteins, the media samples from the transfected cells were applied to Ni-NTA agarose (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) affinity chromatography using Poly-prep gravity-flow columns (Bio-Rad, Hercules, CA, USA). After washing with TBS (10 mM Tris buffer pH 8.0 containing 150 mM NaCl) containing 10 mM imidazole, the bound proteins were eluted with TBS containing 250 mM imidazole. The purified samples were analyzed by Western blotting using the anti-Myc antibody (Developmental Studies Hybridoma Bank (DSHB), University of Iowa, Iowa City, IA, USA, 1:2000 dilution) and GelCode blue stain (Thermo Fisher Scientific, Waltham, MA, USA).
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5

Recombinant Protein Purification in E. coli

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Recombinant His6-tagged proteins were expressed in and purified from Escherichia coli. The BL21(DE3)pLys bacterial cells were transformed with pET30-based vectors, cultured, and then exposed to 0.5 mM isopropyl-β-D-thiogalactopyranoside for 16 h at 10°C. The cells were then subjected to ultrasonic treatment, and the soluble fraction of the cell lysates was isolated. The expressed His6-tagged proteins were purified with the use of Ni-NTA agarose (Wako) and were eluted with imidazole (Wako). The purified proteins were concentrated with an Amicon Ultra device (Merck Millipore) and dialyzed against PBS with the use of a Mini Dialysis Kit (GE Healthcare).
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6

Efficient Purification of His-tagged Proteins

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A 1.5 mL of culture supernatant adjusted to pH 9.0, 150 µL of Ni-NTA Agarose (FUJIFILM Wako Chemicals, Osaka, Japan) was added and mixed in a rotator at 4 °C, for 30 min. After centrifugation at 500g for 5 min, the supernatant was removed and 500 µL of Wash Buffer (20 mM imidazole, 500 mM NaCl, 20 mM Tris-HCl pH 8.0) was added. After suspension by vortexing, centrifugation was performed at 500g for 5 min and the supernatant was removed. After repeating this washing twice, 50 µL of Elution Buffer (300 mM imidazole, 500 mM NaCl, 20 mM Tris-HCl pH 8.0) was added, and mixed in a rotator at 4 °C, for 30 min. After centrifugation at 500g for 5 min, the supernatant was transferred to a new tube, and His-tagged protein was obtained.
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7

Protein A Sepharose Affinity Purification

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Protein A Sepharose was purchased from GE Healthcare Bio-Sciences. MG132 was purchased from Calbiochem. Cycloheximide was purchased from Nacalai Tesque. Ethylenediaminetetraacetic acid (EDTA), cOmplete EDTA-free protease inhibitor cocktail, 4′,6-diamidino-2-phenylindole (DAPI), polybrene, Ponceau S, Triton X-100, and Tween-20 were purchased from Merck. Can Get Signal was purchased from Toyobo. Bafilomycin A1, Ni–NTA agarose, and gelatin were purchased from Fujifilm Wako Pure Chemical Corporation.
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