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Axio fluorescence microscope

Manufactured by Zeiss
Sourced in Germany

The Axio fluorescence microscope is a laboratory equipment designed for fluorescence imaging. It is capable of detecting and analyzing fluorescent signals within a sample. The core function of this microscope is to provide high-quality, detailed images of fluorescently labeled specimens.

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34 protocols using axio fluorescence microscope

1

Thrombus-Targeted tPA Delivery

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Citrated human blood was perfused in the collagen-coated channels at a wall shear rate of 1000 s−1 at room temperature to form nonocclusive thrombi. Then, the channels were washed by perfusion with HT buffer for 2 min. FITC-labeled tPA-PEG-NV or tPA-cRGD-PEG-NV were perfused in the thrombi-bearing channels for 5 min to demonstrate the cRGD-induced selective binding to thrombi. The channels were washed by perfusion with HT buffer for 2 min and imaged using a Zeiss Axio fluorescence microscope.
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2

Visualizing Zinc-Dependent Trafficking of hZIP4

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HEK293 cells stably expressing hZIP4-HA were grown in 24-well trays for 16 h on sterile glass coverslips. For the basal condition, the cells were incubated in the basal medium with 4 μg/ml anti-HA antibodies at 37°C for 30 min. For the other conditions, the cells were first treated with 20 μM TPEN for 10 min at 37°C, washed one time with the Chelex-treated medium and then incubated for 30 min at 37°C in the Chelex-treated medium containing 4 μg/ml anti-HA antibodies without or with 10 μM ZnCl2. For transferrin internalization assay, the cells were treated in the same way under the same condition, except that 25 μg/ml Alexa 488 conjugated transferrin (Thermo Fisher Scientific,Cat# T13342) was added in the medium instead of anti-HA antibodies. The cells were washed twice with 1 mL of ice-cold DPBS and fixed for 10 min at room temperature using 4% formaldehyde. They were then permeabilized and blocked for 1h with DPBS containing 5% goat serum (Cell Signaling Technology, Cat# 5425S) and 0.1% Triton X-100 and then incubated with Alexa-568 goat anti-mouse antibodies at 1:500 (Thermo Fisher Scientific, Cat# A-11004, RRID:AB_2534072) at 4°C for overnight. After three washes with DPBS, coverslips were mounted on slides with fluoroshield mounting medium with DAPI (Abcam, Cat# ab104139). Samples were viewed with a 63X objective using a Zeiss Axio fluorescence microscope.
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3

Immunofluorescence Staining of Intestinal Tissues

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Tissues for immunofluorescence studies were placed in OCT medium then flash frozen prior to storage at -80°C. Intestinal tissues were cut using a cryostat at 6μm then fixed and permeabilized in acetone at -20°C for 10 minutes. After, tissues were blocked with 10% goat serum for 30 minutes, rinsed in PBS (3x) and stained with primary antibodies in PBS with 0.5% BSA overnight at 4°C. Slides were rinsed again with PBS and secondary antibodies were applied for 1 hour at room temperature, rinsed, and counterstained with 4',6-diamidino-2-phenylindole (DAPI) and FlourSave mounting media was applied (Calbiochem; Millipore Canada Ltd., Etobicoke, ON). Tissues were viewed with a Zeiss Axio fluorescence microscope equipped with using ZEN blue software; cells were quantified as previously described[17 (link)].
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4

Quantification of Inflammatory Cell Infiltration

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The slides were prepared similarly as for assessments of neointima formation, washed with PBS and blocked with 5% normal donkey serum for 30 min. Then the slides were incubated with CD68 rat anti-mouse antibody (1:100,Thermofisher, 14-0681-82), Ly-6G/Ly-6C (Gr-1) rat anti-mouse antibody (1:100,R&D, MAB1037-SP), CD3 rat anti mouse antibody (1:100, R&D, MAB4841-SP), B220/CD45R rat anti mouse antibody (10ug/ml,R&D, MAB1217-SP), CD31 rabbit anti-mouse antibody (1:100,Abcam, ab28364) overnight at 4°C, then with secondary antibody (donkey anti-rat Alexa Fluor 488,1:1000, Thermofisher, A-21208; donkey anti-rabbit Alexa Fluor 568,1:1000, Thermofisher, A10042) for 1 h at RT in dark, and finally with DAPI for 10 min to allow for nuclear staining. The sections were mounted in Glycergel mounting media, and imaged under Axio Fluorescence Microscope (Zeiss). Positively stained cells were counted in 10 high-power fields (X400) for each section and ≥5 sections per carotid artery, normalized to the total number of cells per field, averaged, and expressed as a percentage.
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5

Fixation and Mounting of Cells for Fluorescence Microscopy

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The aliquot removed prior to flow cytometry analysis was transferred to another 96-well plate and fixed in 4% formaldehyde. Fixed cells were mounted to glass slides with ProLongTM Diamond Antifade Mountant with 4′,6-diamidino-2-phenylindole (DAPI; Thermo Fisher; cat. # P36962) and coverslips were sealed with clear nail polish. Samples were imaged with a Zeiss Axio fluorescence microscope (400× magnification) and Zen 2.3 software. Settings were kept constant while imaging all samples from the same timepoint.
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6

Perilla Essential Oil and 2-Hexanoylfuran Toxicity

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Third-instar larvae were exposed to LC50 and LC90 concentrations of perilla essential oil and 2-hexanoylfuran for 24 h, respectively, and controls were maintained for the same period without treatment. The larvae were fixed in 4% paraformaldehyde for 24 h. Subsequently, the samples were dehydrated in a graded ethanol series and embedded in tissue paraffin. The paraffin-embedded tissue blocks were sectioned into 4 µM thick sections using a microtome, stained with hematoxylin and eosin, and then viewed using an AXIO fluorescence microscope (Zeiss, Jena, Germany).
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7

Thrombus Formation and Dissolution Dynamics

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Citrated human blood was preincubated with DIOC6 (2.5 μM) and AF-647-FBG (300 μg ml−1) for 3 min. After that, the blood was mixed with CaCl2 (1 mM) and MgCl2 (1 mM) and was then perfused in the collagen- and TF-coated channels at a wall shear rate of 1000 s−1 for 8 min to generate stable nonocclusive thrombi. Images were acquired to monitor thrombus formation (platelet and fibrin accumulation). Then, channels were washed by perfusion with HT buffer for 2 min, and blood containing cRGD-PEG-NV, tPA-PEG-NV, tPA-cRGD-PEG-NV, or free tPA (equivalent tPA dose of 15 μg ml−1) was perfused in the channels at a wall shear rate of 1000 s−1 for the indicated time. Real-time changes in red fluorescence of fibrin and green fluorescence of platelets were monitored. Videos were acquired using a Zeiss Axio fluorescence microscope.
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8

Immunofluorescence Analysis of Inflammatory Markers

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Prior to tissue preparation for histological analyses, mice (pups) were anesthetized with 2% isoflurane in a combination of nitrous oxide and oxygen (7:3, v/v) via an isoflurane vaporizer (VetEquip, Livermore, CA). The change in the overall morphology in skin and brain was assessed by hematoxylin and eosin staining, as described previously [69 (link)]. Distribution of tumor necrosis factor (TNF)α, interferon (IFN)γ, and interleukin (IL)-13 was determined using anti-TNFα, anti-IFNγ, or anti-IL-13 (Invitrogen, Carlsbad, CA), respectively, as described earlier [70 (link)]. The secondary antibody was Alexa Fluor® 488 goat anti-rabbit IgG (Invitrogen, Carlsbad, CA). Tissues were counterstained with the nuclear marker 4′,6-diamidino-2-phenylindole (DAPI) (Vector Laboratories) for nuclear visualization. Slides were examined with a Carl Zeiss Axio fluorescence microscope.
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9

Liver DNA Damage Assessment by Comet Assay

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Liver tissues were frozen in liquid nitrogen and gently homogenized into a powder. The extent of DNA strand breaks in the liver tissues of mothers and fetuses from the three groups was assessed using the alkaline comet assay, as previously described by Tice et al.117 (link). Comets were analyzed using an Axio fluorescence microscope (Carl Zeiss, Germany) with an excitation filter at 524 nm and a barrier filter at 605 nm. A Komet 5.0 analysis system developed by Kinetic Imaging, Ltd. (Liverpool, United Kingdom) connected to a charge-coupled device (CCD) camera was used to measure tail length, percentage of migrated DNA, and tail moment.
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10

Flagella Measurement Using NanoOrange

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NanoOrange was used to measure flagella via a fluorescence plate reader, using the manufacturer’s protocol with a few adjustments. Cultures (5 mL) were grown overnight in LB20, LB60, and LB100 broth. Cells from each media type were diluted 10-fold into LB20, LB60, LB100 in triplicate in two 24-well plates. After 3 hours incubation at 30°C with shaking, 200 µL aliquots were incubated for 10 minutes at 90°C with 5 µL NanoOrange working solution, then 200 µL aliquots were transferred into a 96-well plate. Fluorescence was measured using a ZEISS Axio fluorescence microscope after 5 minutes. Control samples were composed of sterile mediums incubated with NanoOrange. The fluorescence of the controls was subtracted from each culture data. Average values and standard deviation of triplicate samples were calculated.
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