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33 protocols using ab40754

1

Exploring Wnt Signaling in Clear Cell Renal Cell Carcinoma

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The cell lines used in this study included ACHN, A498, 786-O, and HK2, purchased from the Chinese Academy of Sciences Cell Bank (Shanghai, China). These cells were cultured according to established procedures in a medium containing 10% fetal bovine serum with penicillin/streptomycin in a 37 incubator with a humidified 5% carbon dioxide atmosphere.
Rabbit anti-β-actin (ab8227; Abcam) was used as a reference protein antibody. The target protein antibodies and Wnt pathway-related antibodies included rabbit anti-ARL4C (ab122025, Abcam), anti-c-myc (ab32072, Abcam), and anti-cyclin D1 (ab40754, Abcam). The EMT-related protein antibodies used in this study were anti-E-cadherin, anti-N-cadherin, and anti-vimentin (Proteintech, Wuhan, China). The Wnt agonist 1 powder (Selleck Chemicals, Shanghai, China) was dissolved according to the manufacturer's instructions and added to the medium containing ccRCC cells for 24 h at 37°C.
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2

Western Blot Protein Analysis Protocol

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All proteins were extracted by RIPA buffer (Solarbio Life Science, Beijing, China) mixed with protease inhibitors on ice plates. Then, protein concentration was qualified by a BCA protein assay kit purchased from Solarbio Life Science. Next, equal amounts of protein were loaded onto 10% SDS-PAGE gels and transferred to nitrocellulose membranes (Millipore). The membranes were blocked with 5% BSA (Sigma-Aldrich) and incubated with primary antibodies at 4°C overnight. On the second day, the membranes were washed with 1x TBS solution and incubated with the secondary antibody conjugated with HRP at normal temperature for 1 hour. Finally, the results were determined using the ChemiDocTM Imaging System (Bio-Rad, Hercules, CA, USA). The following primary antibodies were used: FOXP2 (20529-1-AP, 1:1000, ProteinTech), PCNA (ab29, 1:1000, Abcam), cyclin D1 (ab40754, 1:5000, Abcam), caspase-1 (sc-392736, 1:1000, Santa Cruz), caspase-3 (sc-7272, 1:1000, Santa Cruz), caspase-9 (ab32539, 1:1000, Abcam), GSDMD (ab209845, 1:1000, Abcam), GAPDH (1:1000, TransGen Biotech, Beijing), Flag-tag (D6W5B, CST), HA-tag (C29F4, CST), and β-actin (1:1000, TransGen Biotech, Beijing). The secondary protein was purchased from TransGen Biotech (Beijing).
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3

Western Blot Analysis of Cell Signaling Proteins

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Procedures were as described previously (Li et al., 2020 (link)). The primary antibody information is listed below: SMAD4 (Abcam, ab110175), β-actin (Abcam, ab6276), cyclin-dependent kinase 4 (CDK4) (Abcam, ab193968), cyclin D1 (Abcam, ab40754), Bcl-2 (Abcam, ab182858), Bax (Abcam, ab263897), and Caspase-3 (Abcam, ab32351).
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4

Protein Expression Analysis Protocol

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Radioimmunoprecipitation assay lysis buffer (Sigma) was adopted to obtain protein samples. Forty micrograms of protein samples were run on sodium dodecyl sulfate-polyacrylamide gel electrophoresis and blotted onto the polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). After sealing for 1 h in 5% milk, primary antibodies were incubated with the membrane, including anti-Cyclin D1 (ab40754; Abcam, Cambridge, MA, USA), anti-caspase 3 (ab13585; Abcam), anti-matrix metallopeptidase 2 (anti-MMP2; ab181286; Abcam), anti- matrix metallopeptidase 2 (anti-MMP9; ab137867; Abcam), anti-GOT2 (SAB2100950; Sigma), anti-proliferating cell nuclear antigen (anti-PCNA; ab29; Abcam), and anti-β-Actin (ab8226; Abcam). After washing using Tris buffered saline–Tween 20 (Sangon Biotech) for 3 times, secondary antibody (Abcam) was added to mark the primary antibodies. Protein bands were determined using chemiluminescence reagents (Bio-Rad).
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5

Western Blot Analysis of CCND1 Protein

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Total protein from HT-29 cells was extracted using a RIPA kit (Beyotime Institute of Biotechnology) with the addition of 1% proteinase inhibitor. Protein concentrations were detected via the BCA method (Beyotime Institute of Biotechnology). After 5 min heating at 95°C, proteins from each sample were separated by 10% SDS-PAGE (Nanjing KeyGen Biotech Co., Ltd.) using 20 µg per lane, then transferred onto a 0.22 µm PVDF membrane (Beyotime Institute of Biotechnology). The proteins were blocked with 5% non-fat milk at room temperature for 2 h, then protein bands were incubated with primary antibodies overnight at 4°C. Next, the protein bands were washed with TBST (TBS buffer with 0.1% Tween 20) three times and incubated with a horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary IgG (1:5,000; cat. no. ab6721; Abcam) for 1h at room temperature. The protein bands were washed with TBST an additional four times and visualized using an ECL kit (Bio-Rad Laboratories, Inc. and observed using Image Lab software 4.0 (Bio-Rad Laboratories, Inc.). Primary antibodies against CCND1 (cat. no. ab40754, 1:5,000) and β-actin (cat. no. ab8227, 1:5,000) were purchased from Abcam. β-actin was used as an endogenous control to normalize CCND1 expression.
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6

Western Blot Analysis of NSCLC Proteins

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The RIPA lysis buffer was purchased from Solarbio (Beijing, China) to lyse the NSCLC cells/tissues and extract the total protein, according to the experimental procedures recorded in the previous publications [36 (link), 37 (link)], the expression levels of GOT1, β-actin, cyclin D1, CDK2, cleaved caspase-3 and Bax were examined by using the Western Blot analysis. Specifically, the 40 μg/lane protein lysates were separated by using the 10 -15% SDS-PAGE, and the target protein bands were transferred onto the PVDF membranes (Millipore, USA). Next, the membranes were incubated with 5% skim milk for 70 min at room temperature for blocking, and the membranes were probed with the primary antibodies against GOT1 (1:1500, MW: 50 kDa, #PA5–24634, Thermo, USA), β-actin (1:2000, MW: 42 kDa, #ab6276, Abcam, UK), cyclin D1 (1:1500, MW: 35 kDa, #ab40754, Abcam, UK), CDK2 (1:2000, MW: 33 kDa, #ab32147, Abcam, UK), cleaved caspase-3 (1:1500, MW: 17 kDa, #ab32042, Abcam, UK) and Bax (1:1500, MW: 21 kDa, #ab32503, Abcam, UK) overnight at 4 °C. After washing by PBS buffer for 3 times, the PVDF membranes were incubated with the secondary antibody (Abcam, UK) for 120 min at room temperature. Finally, the protein bands were visualized by ECL system (GE Healthcare Bio-science, USA) and quantified by using the Image J software.
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7

Immunofluorescence Analysis of Cellular Proteins

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Cells were seeded in 24-well plates (2 × 105 per well)
containing round glass slides (14 mm in diameter), and when cells grow
to 80% confluence, the glass slides with cells on were fixed with
acetone on ice for 8 min, cells were subsequently blocked with 1%
bovine serum albumin (BSA) and 0.5% Tween at room temperature for 30
min, and incubated with primary antibodies overnight at 4°C. The next
day, cells on the glass slides were washed three times with the block
solution and incubated with fluorescent-conjugated secondary antibody
for 2 h at room temperature, after which cells were washed three times
with the block solution. The primary antibodies consist of mouse
anti-Pin1 (sc-46660; Santa Cruz, Dallas, TX, USA), rabbit anti-Pin1
(ab192036; Abcam), rabbit anti-ATF7 (ab87844; Abcam), and rabbit
anti-Cyclin D1 (ab40754; Abcam). DAPI (D9564; Sigma-Aldrich) staining
was used to show the cell nucleus. Images were acquired using confocal
laser scanning microscope (FV3000; Olympus) and analyzed by ImageJ
software.
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8

Western Blot Analysis of Cell Cycle Regulators

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Total proteins were extracted by CelLytic™ MT Cell Lysis Reagent (Sigma-Aldrich, St Louis, USA) containing protease inhibitor (cOmplete™ Tablets, EDTA-free, Sigma-Aldrich). 10% SDS-PAGE was performed to separate cell lysate proteins which were then transferred onto 0.22 μm PVDF membrane. The membrane was blocked with 5% fat-free milk in TBST for 2 h at room temperature and incubated with the primary antibodies at 4°C overnight. Following the incubation with HRP labeled the secondary antibodies for 2 h at room temperature, signals were detected by exposure to films with the chemiluminescence system (SignalFire™ Plus ECL Reagent, CST, USA). GAPDH was used as an internal control. The antibodies used for Western blot were as follows: anti-SOX12 (ab54371, Abcam; 1:500), anti-Cyclin D1 (ab40754, Abcam; 1:2000), anti-CDK4 (ab68266, Abcam; 1:500), anti-CDK6 (ab124821, Abcam; 1:50,000) anti-GAPDH (ab8245, Abcam; 1:1000), HRP-conjugated Goat Anti-Mouse IgG (H+L) (ab205719, Abcam; 1:10,000), HRP-conjugated Goat Anti-Rabbit IgG (H+L) (ab205718, Abcam; 1:10,000).
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9

Western Blot Analysis of Protein Targets

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All protein was extracted in radioimmunoprecipitation assay (RIPA) buffer (Solarbio Life Science, Beijing, China) mixed with protease inhibitor on ice-cold plates. Then, the protein concentration was determined with a bicinchoninic acid (BCA) protein assay kit purchased from Solarbio Life Science. Next, we loaded equal amounts of protein into a 10% SDS–PAGE gel for separation and transferred the protein onto nitrocellulose membranes (Millipore). The membranes were blocked with 5% BSA (Sigma-Aldrich) and incubated with primary antibodies at 4 °C overnight. On the second day, the membranes were washed with 1× TBS solution and incubated with secondary antibody conjugated with horseradish peroxidase (HRP) at normal temperature for 1 h. Finally, the results were obtained using a ChemiDocTM Imaging System (Bio-Rad, Hercules, CA, USA). Throughout the entire study, primary antibodies targeting the following proteins were used: RNF31 (ab46332, 1:1000, Abcam), p53 (ab1101, 1:1000 Abcam), PCNA (ab29, 1:1000, Abcam), Cyclin D1 (ab40754, 1:5000, Abcam), Bcl-xl (2764, 1:1000, CST), GAPDH (1:1000, TransGen Biotech, Beijing), Flag-tag (D6W5B, CST), HA-tag (C29F4, CST), and β-actin (1:1000, TransGen Biotech, Beijing). The secondary antibodies were purchased from TransGen Biotech (Beijing).
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10

Immunoblotting of Cancer Signaling Proteins

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Immunoblotting was performed as described previously (48 (link)). The following primary antibodies were used: anti-BRD4 antibody (A301-985A100, Bethyl Laboratories), anti-RET antibody (ab134100, Abcam), anti-RET (phospho Y1015) antibody (ab74154, Abcam), anti-Raf1 antibody (A19638, Abclonal), anti-phospho-Raf1-S259 antibody (AP1012, Abclonal), anti-MEK1/MEK2 antibody (A4868, Abclonal), anti-phospho-MAP2K1-S217/MAP2K2-S221 antibody (AP0209, Abclonal), anti-ERK1/2 antibody (A4782, Abclonal), anti-phospho-ERK1-T202/Y204 + ERK2-T185/Y187 antibody (AP0472, Abclonal), anti-p90Rsk antibody (A4695, Abclonal), anti-phospho-P90RSK-S380 antibody (AP0562, Abclonal), anti-ERα antibody (ab32063, Abcam), anti-phospho-ERα (Ser167) antibody (64508s, Cell Signaling Technology), anti-phospho-ERα (Ser118) antibody (ab32396, Abcam), anti-CCND1 antibody (ab40754, Abcam), anti-c-MYC antibody (SC-40, Santa Cruz Biotech) and anti-ACTIN antibody (8432, Cell Signaling Technology).
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