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Non targeting control sirna

Manufactured by Santa Cruz Biotechnology
Sourced in United States

The Non-targeting control siRNA is a synthetic double-stranded RNA molecule that does not target any known gene. It is designed to serve as a control for experiments using RNA interference (RNAi) technology.

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31 protocols using non targeting control sirna

1

Silencing USP48 in Human Cancer Cells

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Mixtures of small interfering RNAs (siRNAs) targeting the human USP48 transcript and non-targeting control siRNAs were purchased from Santa Cruz Biotechnology. Hiperfect transfection reagent (QIAGEN) was used for siRNA transfection into the U2OS and H1299 cell lines according to the manufacturer’s protocol. Cells were collected 48 h post-transfection, washed with PBS, lysed in 2x SDS sample buffer, and analyzed by SDS-PAGE and Western blotting. An anti-Mdm2 mouse monoclonal antibody (Ab-1) (Merck Millipore) and an anti-USP48 rabbit polyclonal antibody (Abcam) were used to detect the endogenous levels of Mdm2 and USP48, respectively.
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2

Modulation of GMSC signaling by siRNA and CRISPR

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For siRNA knockdown, GMSCs (0.2 × 106) were seeded on a six-well culture plate. Fas, FAP-1, Cav-1, SNAP25, and VAMP5 siRNAs (Santa Cruz Biotechnology) were used to treat the GMSCs according to the manufacturer’s instructions. Nontargeting control siRNAs (Santa Cruz Biotechnology) were used as negative controls. Fap-1 CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 (CRISPR-associated protein 9) knockout plasmid (sc-422505, Santa Cruz Biotechnology) was used to knock out Fap-1 expression in GMSCs according to the manufacturer’s instructions. Briefly, GMSCs (0.2 × 106) were seeded on a six-well culture plate. The cells were allowed to grow to 40 to 80% confluence and then transfected with Fap-1 CRISPR/Cas9 knockout plasmids using Lipofectamine LTX with Plus reagent (Life Technologies) according to the manufacturer’s instructions. Scrambled guide RNA CRISPR/Cas9 plasmids were used as a negative control. The efficiency of siRNA knockdown and CRISPR/Cas9 knockout was confirmed by Western blot analysis. For cytokine treatments, GMSCs were treated with different concentrations of IFN-γ and TNF-α (Peprotech; 0, 20, 50, 100, and 200 ng/ml) or TNF-α (20 ng/ml) for 24 hours. After transfection or cytokine treatment, cells were used for protein extraction for Western immunoblotting, and the culture supernatants were used for ELISA.
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3

Silencing IL-13Rα2 Enhances Invasion

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ARCaPM cells were transfected with 40 pmol of IL‐13Rα2‐specific (pool of 3 target‐specific 19‐25 nt) or nontargeting control siRNAs (Santa Cruz Biotechnology, Dallas, TX, USA) according to manufacturer's instructions. At 24 hours posttransfection, cells were fasted overnight in 0.1% BSA, harvested, and used for invasion assays.
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4

Silencing and Overexpressing Epigenetic Regulators in BMMSCs

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For siRNA knockdown, we seeded 0.2 × 106 BMMSCs on a 6-well culture plate. Tet1, Tet2, and P2rX7 siRNAs (Santa Cruz Biotechnology) were used to treat the BMMSCs according to the manufacturer’s instructions. Non-targeting control siRNAs (Santa Cruz Biotechnology) were used as negative controls. pCDF-mTET1 (Addgene #81052), pCDF-His-mTET1CD∆cat (Addgene #81054), pcDNA3-Tet2 (Addgene #60939), and pScalps_Puro_mTet2 catalytic domain HxD (Addgene #79611) were purchased from Addgene (Cambridge, MA). For P2rX7 CRISPR activation and Tet plasmid (Santa Cruz Biotechnology) transfection, we seeded 0.2 × 106 BMMSCs on a 6-well culture plate, and transfected with P2rX7 CRISPR activation plasmid (Santa Cruz Biotechnology) using Lipofectamine LTX with Plus reagent (Life Technologies) according to the manufacturer’s instructions. We used control CRISPR activation plasmids as a negative control. The miR-297a-5p, miR-297b-5p, and miR-297c-5p mimics, inhibitors and negative controls (Qiagen) were transfected into cells according to the manufacturer’s instructions. Briefly, BMMSCs (0.2 × 106) were seeded on a 6-well culture plate and transfected with miR-297a-5p, miR-297b-5p, miR-297c-5p mimics, or inhibitors using Lipofectamine LTX with Plus reagent (Life Technologies) according to the manufacturer’s instructions.
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5

siRNA Knockdown of AMPK in Cells

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siRNA duplex oligonucleotides against mouse AMPKα1/2 were obtained from Santa Cruz. Non-targeting control siRNAs (Santa Cruz) were used as negative controls. In addition, the siRNAs were transfected into the cells at a final concentration of 50 nM using siPORT NeoFX (Invitrogen). The medium was replaced after 8 h.
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6

siRNA Knockdown of Human LRP6

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Small interfering RNA (siRNA) duplex oligonucleotides targeting human LRP6 were also obtained from Santa Cruz Biotechnology. Non-targeting control siRNAs (Santa Cruz Biotechnology) were used as negative controls. These siRNAs were transfected into cells at a final concentration of 50 nM using siPORT NeoFX (Invitrogen). The medium was replaced 8 h after transfection.
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7

Silencing Tlr2 and Tnfr1 in HEKn cells

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Human Tlr2 and Tnfr1 siRNAs (Dharmacon) and non-targeting control siRNAs (Santa Cruz) were reverse-transfected for 24 h into HEKn cells using Lipofectamine RNAiMAX (Life Technologies) according to the manufacturer’s instructions. Keratinocytes were transfected with poly dA:dT (InvivoGen) at a final concentration of 1 μg ml−1 using Lipofectamine 3000 (Life Technologies) as per the manufacturer’s protocol.
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8

IL-1Ra Knockdown in OECs

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For IL-1Ra knockdown, OECs (5 × 105 cells) were seeded on a 6-well culture plate. siRNAs (Santa Cruz Biotechnology, Santa Cruz-CA, USA) were used to treat the OECs according to the manufacturer's instructions (Table S8). Non-targeting control siRNAs (Santa Cruz Biotechnology, Santa Cruz-CA, USA) were used as negative controls. The efficiency of siRNA knockdown was confirmed by Western blot and qRT-PCR analysis.
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9

BV2 Cell Transfection with AdipoR siRNAs

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Mouse AdipoR1 and AdipoR2 siRNAs and non-targeting control siRNA were purchased from Santa Cruz Biotechnology. BV2 cells were seeded in a six-well tissue culture plate until 80% confluency. Then, BV2 cells were transfected with siRNA using lipofectamine 3000 reagent (Invitrogen, USA). The mixture of siRNA duplex and reagent was diluted in Opti-MEM medium (Gibco) and incubated at RT for 45 min. Then, the siRNA duplex and reagent mixture were added to BV2 cell. After 6-h incubation, medium containing siRNA was removed and cells were further cultured for 18 h before using in experiments and analysis.
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10

Modulating GMSC Responses to IFN-γ and TNF-α

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GMSCs were passaged on a culture plate and were 50–70% confluent at the time of transfection. Fas, Fap-1, and Cav-1 siRNA (Santa Cruz Biotechnology) were used to treat the GMSCs according to the manufacturer’s instructions. Non-targeting control siRNA (Santa Cruz Biotechnology) was used as negative controls. Transfected GMSCs were incubated at 37°C for 48 h before further assay. The efficiency of siRNA knockdown was confirmed by western blotting analysis. Transfected cells were then treated with different concentrations of IFN-γ or TNF-α for 24 h, cells were used for protein extraction for western blotting, and the culture supernatants were used for ELISA.
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