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4 protocols using zymography development buffer

1

Gelatin Zymography Analysis of HMC3 Cells

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HMC3 cells (800 k/well) were plated on six-well plates and, when confluence was reached, the monolayer was subjected to mechanical damage by multiple scratches using a sterile P200 pipette tip. After 24 h treatment, pellets were collected in RIPA lysis buffer (Sigma-Aldrich) supplemented with protease and phosphatase inhibitors. Fifty μg of each sample was separated in non-reducing conditions using Novex 10% Zymogram (Gelatin) Gels (Thermo Fisher Scientific), containing gelatin as a substrate. The gel was washed in renaturing buffer (2.5% TritonX-100) for 45 min at 25 °C and was then incubated with zymography development buffer (Bio-Rad Laboratories, Milan, Italy) for 45 min at 25 °C and maintained in fresh zymography development buffer for 22 h at 37 °C. The gel was then stained with 0.25% R-250 Coomassie solution (Sigma; 30 min at 25 °C) and destained in a 2:1 methanol:acetic acid solution (30 min at 25 °C). IBright 1500 (Thermo Fisher Scientific) was used to acquire digital scans of the gels. Images were subjected to densitometric analysis with the aid of the ImageJ processing software (https://imagej.nih.gov accessed on 2 August 2022).
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2

Gelatin Zymography for MMP-9 Detection

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20 μl of cell-free BMDM supernatant was added to 20 μl of Zymogram Sample Buffer (Bio-Rad) and loaded onto 10% polyacrylamide gels embedded with gelatin (Bio-Rad). Electrophoresis buffer was prepared from a 10× stock solution (15 g Tris base, 72 g Glycine, 5 g Sodium dodecyl sulfate dissolved in 500 ml Milli-Q water). Zymography gels were electrophoresed at 100 Volts for 1 hour. After electrophoresis, gels were removed from the cassette and incubated in 1× Zymogram Renaturation Buffer (Bio-Rad) at room temperature on a rocker plate for 30 minutes, followed by overnight incubation at 37°C in Zymography Development Buffer (Bio-Rad). Gels were then stained with 2.5% Coomassie Blue R-250 (Bio-Rad) dissolved in a solution of 50% methanol, 10% glacial acetic acid, and 50% Milli-Q water for 30 minutes. Gels were destained using 50% methanol, 10% glacial acetic acid, and 50% Milli-Q water, then imaged. Density analysis of the bands was performed using ImageJ. The appropriate position of the MMP-9 zymography band was verified using recombinant mouse MMP-9 (AnaSpec) (data not shown).
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3

Characterization of MMP-2 and MMP-9 Activity

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Carnosine (L-carnosine), gelatin, and TTC (triphenyltetrazolium chloride) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Suture was purchased from Doccol Corp (Redlands, CA, USA). Gelatin-sepharose bead (Gelatin Sepharose 4B) was purchased from GE Healthcare (Chicago, IL, USA). Zymography renaturation buffer, zymography development buffer, and Coomassie Brilliant Blue R-250 was purchased from Bio-Rad (Hercules, CA, USA). Recombinant human MMP-2 was purchased from Merck Millipore (Burlington, MA, USA). Recombinant mouse MMP-9 was purchased from R&D Systems (Minneapolis, MC, USA). EnzChek Gelatinase/Collagenase Assay was purchased from Invitrogen (Carlsbad, CA, USA). Primary antibodies against ZO-1 and claudin-5, Alexa Fluor 555 donkey anti-rabbit, and Pierce BCA protein assay kit were purchased from Thermo Fisher Scientific (Rockford, IL, USA).
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4

Plasma Protein Profiling by Zymography

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Total protein of plasma samples was measured using the Bradford method (Bio-Rad, Richmond, CA, USA). Diluted (1 : 50) plasma samples were loaded onto 10% gelatin gels, and electrophoresis was performed at 100 constant voltages. Gels were washed twice with 2.5% Triton-X for 20 min and then incubated at 37°C overnight in zymography Development Buffer (Bio-Rad). The following day, to visualize the bands, gels were stained with Coomassie Brilliant Blue Dye (Bio-Rad) for 3 hrs and destained with Destaining Solution for 45 min. The gels were rehydrated in water overnight, then scanned and analyzed using ImageJ program developed at the National Institutes of Health (USA).
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